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Report for CCDS15022.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15022.1 Public Mus musculus 1 Rpe 23 108 98 CCDS HistoryNCBI Gene:66646Re-query CCDS DB by CCDS ID:15022.1Re-query CCDS DB by GeneID:66646See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15022.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027157.9 ENSMUSP00000027157.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027157.9Link to Ensembl Protein Viewer:ENSMUSP00000027157.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000027157Re-query CCDS DB by Protein ID:ENSMUSP00000027157
Original member Current member NCBI NM_025683.3 NP_079959.2 Accepted alive Link to Nucleotide Sequence:NM_025683.3Link to Protein Sequence:NP_079959.2Re-query CCDS DB by Nucleotide ID:NM_025683Re-query CCDS DB by Protein ID:NP_079959Link to BLAST:NP_079959.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079959.2 228 Q8VEE0 228 100% 0 0

Chromosomal Locations for CCDS 15022.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 66700907 66701028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66706446 66706525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66714577 66714716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66715113 66715247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66715959 66716045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66717754 66717876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (687 nt):
ATGGCGTCGGGCTGCAAGATCGGCCCGTCCATCCTCAACAGCGACCTGGCCAACCTGGGGGCCGAGTGCC
TGCGCATGCTGGACTCGGGGGCCGACTACCTGCACCTGGATGTAATGGACGGGCATTTTGTTCCCAATAT
CACTTTTGGTCACCCTGTGGTTGAAAGCCTCCGAAAGCAGCTAGGCCAGGACCCTTTCTTTGATATGCAC
ATGATGGTGTCTAGGCCAGAACAGTGGGTAAAACCAATGGCTGTGGCAGGTGCCAATCAATATACCTTTC
ATCTTGAGGCAACTGAGAACCCAGGGGCTTTGATTAAAGACATCCGGGAGAATGGGATGAAGGTTGGCCT
TGCCATCAAACCAGGAACTACAGTTGAATATTTGGCCCCATGGGCTAATCAAATAGATATGGCCTTGGTA
ATGACCGTAGAACCTGGGTTTGGAGGGCAGAAATTCATGGAAGACATGATGCCCAAGGTTCACTGGTTGA
GGACCCAGTTTCCAACTTTGGATATAGAGGTCGATGGCGGAGTAGGTCCTGACACTGTTCAGAAGTGTGC
GGAGGCAGGAGCTAACATGATTGTGTCTGGCAGTGCCATTATGAGGAGTGATGACCCCAGAGCTGTTATC
AACTTACTAAGAAACGTTTGCTCAGAAGCGGCTCAGAAACGTTCCCTTGATCGATGA

Translation (228 aa):
MASGCKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMH
MMVSRPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTTVEYLAPWANQIDMALV
MTVEPGFGGQKFMEDMMPKVHWLRTQFPTLDIEVDGGVGPDTVQKCAEAGANMIVSGSAIMRSDDPRAVI
NLLRNVCSEAAQKRSLDR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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