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Report for CCDS15072.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15072.1 Public Mus musculus 1 Gmppa 23 108 98 CCDS HistoryNCBI Gene:69080Re-query CCDS DB by CCDS ID:15072.1Re-query CCDS DB by GeneID:69080See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15072.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037796.13 ENSMUSP00000035564.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037796.13Link to Ensembl Protein Viewer:ENSMUSP00000035564.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000037796Re-query CCDS DB by Protein ID:ENSMUSP00000035564
Original member Current member EBI ENSMUST00000113584.7 ENSMUSP00000109214.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113584.7Link to Ensembl Protein Viewer:ENSMUSP00000109214.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113584Re-query CCDS DB by Protein ID:ENSMUSP00000109214
Original member Current member NCBI NM_001357169.1 NP_001344098.1 Accepted alive Link to Nucleotide Sequence:NM_001357169.1Link to Protein Sequence:NP_001344098.1Re-query CCDS DB by Nucleotide ID:NM_001357169Re-query CCDS DB by Protein ID:NP_001344098Link to BLAST:NP_001344098.1
Original member Current member NCBI NM_001357170.1 NP_001344099.1 Accepted alive Link to Nucleotide Sequence:NM_001357170.1Link to Protein Sequence:NP_001344099.1Re-query CCDS DB by Nucleotide ID:NM_001357170Re-query CCDS DB by Protein ID:NP_001344099Link to BLAST:NP_001344099.1
Original member Current member NCBI NM_133708.4 NP_598469.1 Accepted alive Link to Nucleotide Sequence:NM_133708.4Link to Protein Sequence:NP_598469.1Re-query CCDS DB by Nucleotide ID:NM_133708Re-query CCDS DB by Protein ID:NP_598469Link to BLAST:NP_598469.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344098.1 420 Q922H4 420 100% 0 0
NP_001344099.1 420 Q922H4 420 100% 0 0
NP_598469.1 420 Q922H4 420 100% 0 0

Chromosomal Locations for CCDS 15072.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 75436799 75436838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75436937 75437034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75438251 75438354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75438842 75439028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75439345 75439404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75440412 75440542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75441475 75441609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75441730 75441827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75441985 75442031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75442185 75442277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75442444 75442612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75442901 75443001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1263 nt):
ATGCTCAAAGCTGTGATTCTCATTGGAGGCCCCCAGAAGGGGACTCGCTTCAGGCCTTTGTCTTTTGAGG
TGCCCAAACCTCTGTTTCCTGTGGCAGGCGTTCCCATGATCCAGCACCATATAGAAGCCTGTGCCCAGGT
CCCAGGGATGCAGGAGATTCTTCTCATTGGCTTCTACCAGCCTGATGAGGCCCTCACCCAGTTCCTGGAA
GCTGCCCAGCAGGAGTTTAACCTTCCAGTCAGGTACCTGCAGGAGTTTGCCCCCCTCGGCACAGGGGGTG
GCCTCTACCATTTTCGGGACCAGATCCTGGCTGGGGCACCTGAGGCCTTCTTCGTGCTCAATGCTGACGT
CTGCTCTGACTTCCCCTTGAGCGCCATGTTGGAGGCTCACAGGCGCCAGCGCCACCCTTTCTTACTCCTT
GGCACCACGGCTAACAGGACACAATCCCTCAACTACGGCTGCATCGTTGAGAATCCACAGACTCATGAGG
TTCTGCACTATGTGGAGAAACCCAGCACCTTTATCAGTGACATCATCAACTGTGGCATCTACCTTTTCTC
CCCAGAAGCCCTGAAGCCTCTCCGGGATGTTTTCCAGCGTAACCAACAGGATGGGCAACTGGAGGAGTCC
CCAGGCTCGTGGCCTGGCGCAGGGACCATCCGACTAGAACAGGACGTGTTCTCAGCCCTGGCTGGGCAGG
GCCAAATCTACGTGCACCTCACCGATGGTATCTGGAGCCAGATCAAGTCTGCAGGCTCAGCCCTTTATGC
CTCCCGCCTCTATCTGGGGCGATACCAGATCACTCACCCAGAACGGCTAGCCAGACACACTCCAGGGGGC
CCACGCATCAGAGGAAATGTTTACATCCATCCAACCGCTAAAGTGGCCCCATCAGCTGTGCTGGGCCCCA
ATGTCTCCATTGGGAAGGGGGTGACCATAGGCGAGGGTGTGCGTCTGCGAGAGAGCATTGTCCTCCATGG
AGCCACTTTGCAGGAACACACCTGCGTCCTTCACAGCATTGTGGGCTGGGGGAGCACTGTGGGGCGCTGG
GCCCGTGTAGAGGGGACTCCCAATGACCCCAATCCGAATGACCCCCGAGCTCGCATGGACAGTGAGAGCC
TCTTCAAAGATGGAAAGCTGCTTCCTGCCATCACTATCCTGGGCTGCCGTGTTCGGATCCCTGCCGAGGT
GCTCATCTTGAACTCAATTGTTCTACCACATAAGGAGCTAAGTCGAAGCTTCACCAACCAAATCATCCTG
TGA

Translation (420 aa):
MLKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQPDEALTQFLE
AAQQEFNLPVRYLQEFAPLGTGGGLYHFRDQILAGAPEAFFVLNADVCSDFPLSAMLEAHRRQRHPFLLL
GTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFISDIINCGIYLFSPEALKPLRDVFQRNQQDGQLEES
PGSWPGAGTIRLEQDVFSALAGQGQIYVHLTDGIWSQIKSAGSALYASRLYLGRYQITHPERLARHTPGG
PRIRGNVYIHPTAKVAPSAVLGPNVSIGKGVTIGEGVRLRESIVLHGATLQEHTCVLHSIVGWGSTVGRW
ARVEGTPNDPNPNDPRARMDSESLFKDGKLLPAITILGCRVRIPAEVLILNSIVLPHKELSRSFTNQIIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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