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Report for CCDS15085.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15085.1 Public Mus musculus 1 Mogat1 23 108 98 CCDS HistoryNCBI Gene:68393Re-query CCDS DB by CCDS ID:15085.1Re-query CCDS DB by GeneID:68393See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15085.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000012331.6 ENSMUSP00000012331.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000012331.6Link to Ensembl Protein Viewer:ENSMUSP00000012331.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000012331Re-query CCDS DB by Protein ID:ENSMUSP00000012331
Original member Current member EBI ENSMUST00000113524.7 ENSMUSP00000109152.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113524.7Link to Ensembl Protein Viewer:ENSMUSP00000109152.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113524Re-query CCDS DB by Protein ID:ENSMUSP00000109152
Original member Current member NCBI NM_026713.3 NP_080989.2 Accepted alive Link to Nucleotide Sequence:NM_026713.3Link to Protein Sequence:NP_080989.2Re-query CCDS DB by Nucleotide ID:NM_026713Re-query CCDS DB by Protein ID:NP_080989Link to BLAST:NP_080989.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080989.2 335 Q91ZV4 335 100% 0 0

Chromosomal Locations for CCDS 15085.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 78511962 78512055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78522685 78522863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78523574 78523778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78527570 78527744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78529053 78529252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78537944 78538098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1008 nt):
ATGATGGTCGAGTTCGCGCCACTCAACACCCCGCTGGCACGGTGCCTACAGACCGCTGCGGTGCTGCAGT
GGGTCCTGTCCTTCCTCCTGCTCGTGCAGGTGTGCATTGGAATTATGGTGATGCTGGTCCTGTACAACTA
TTGGTTCCTTTACATCCCATATCTGGTCTGGTTTTACTATGACTGGAGAACCCCAGAGCAAGGAGGCAGA
AGATGGAACTGGGTCCAAAGCTGGCCTGTGTGGAAGTATTTTAAGGAGTATTTTCCAATCTGTCTTGTCA
AAACGCAGGATTTGGATCCGGGTCACAATTATATATTTGGATTTCACCCTCATGGAATATTCGTGCCTGG
AGCCTTTGGAAATTTTTGTACAAAATACTCAGACTTCAAGAAGCTATTTCCTGGCTTTACATCGTATCTC
CACGTGGCCAAGATCTGGTTCTGTTTCCCGTTGTTCCGAGAATATCTGATGAGTAACGGGCCGGTTTCAG
TGTCTAAGGAGAGTTTGTCTCATGTGCTGAGCAAGGATGGAGGTGGCAATGTCTCAATCATTGTCCTCGG
AGGTGCAAAGGAGGCGCTGGAGGCTCACCCAGGAACATTCACCCTGTGCATCCGCCAGCGCAAAGGGTTT
GTTAAGATGGCCTTGACCCATGGTGCCAGTTTGGTTCCAGTATTTTCTTTTGGTGAAAATGATCTATATA
AGCAAATTAACAACCCCAAAGGCTCCTGGCTACGAACTATACAAGACGCAATGTATGATTCAATGGGAGT
AGCCTTGCCACTGATATATGCCAGAGGAATTTTCCAGCACTACTTTGGCATAATGCCCTATCGGAAGCTG
ATCTACACTGTTGTTGGCCGCCCCATCCCTGTTCAGCAGACTCTGAACCCGACCTCAGAGCAGATTGAAG
AGCTGCATCAGACATACCTAGAGGAGCTAAAGAAACTGTTCAATGAACACAAAGGGAAATATGGGATTCC
GGAGCACGAAACTCTGGTATTTAAATAA

Translation (335 aa):
MMVEFAPLNTPLARCLQTAAVLQWVLSFLLLVQVCIGIMVMLVLYNYWFLYIPYLVWFYYDWRTPEQGGR
RWNWVQSWPVWKYFKEYFPICLVKTQDLDPGHNYIFGFHPHGIFVPGAFGNFCTKYSDFKKLFPGFTSYL
HVAKIWFCFPLFREYLMSNGPVSVSKESLSHVLSKDGGGNVSIIVLGGAKEALEAHPGTFTLCIRQRKGF
VKMALTHGASLVPVFSFGENDLYKQINNPKGSWLRTIQDAMYDSMGVALPLIYARGIFQHYFGIMPYRKL
IYTVVGRPIPVQQTLNPTSEQIEELHQTYLEELKKLFNEHKGKYGIPEHETLVFK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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