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Report for CCDS15135.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15135.1 Public Mus musculus 1 Neu2 23 108 98 CCDS HistoryNCBI Gene:23956Re-query CCDS DB by CCDS ID:15135.1Re-query CCDS DB by GeneID:23956See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15135.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070898.5 ENSMUSP00000065439.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070898.5Link to Ensembl Protein Viewer:ENSMUSP00000065439.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000070898Re-query CCDS DB by Protein ID:ENSMUSP00000065439
Original member Current member EBI ENSMUST00000165109.1 ENSMUSP00000126509.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165109.1Link to Ensembl Protein Viewer:ENSMUSP00000126509.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165109Re-query CCDS DB by Protein ID:ENSMUSP00000126509
Original member Current member EBI ENSMUST00000166259.7 ENSMUSP00000132513.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166259.7Link to Ensembl Protein Viewer:ENSMUSP00000132513.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166259Re-query CCDS DB by Protein ID:ENSMUSP00000132513
Original member NCBI NM_001160164.1 NP_001153636.1 Updated not alive Link to Nucleotide Sequence:NM_001160164.1Link to Protein Sequence:NP_001153636.1Re-query CCDS DB by Nucleotide ID:NM_001160164Re-query CCDS DB by Protein ID:NP_001153636
Current member NCBI NM_001160164.2 NP_001153636.1 Accepted alive Link to Nucleotide Sequence:NM_001160164.2Link to Protein Sequence:NP_001153636.1Re-query CCDS DB by Nucleotide ID:NM_001160164Re-query CCDS DB by Protein ID:NP_001153636Link to BLAST:NP_001153636.1
Original member NCBI NM_015750.3 NP_056565.1 Updated not alive Link to Nucleotide Sequence:NM_015750.3Link to Protein Sequence:NP_056565.1Re-query CCDS DB by Nucleotide ID:NM_015750Re-query CCDS DB by Protein ID:NP_056565
Current member NCBI NM_015750.4 NP_056565.1 Accepted alive Link to Nucleotide Sequence:NM_015750.4Link to Protein Sequence:NP_056565.1Re-query CCDS DB by Nucleotide ID:NM_015750Re-query CCDS DB by Protein ID:NP_056565Link to BLAST:NP_056565.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153636.1 379 Q9JMH3 379 100% 0 0
NP_056565.1 379 Q9JMH3 379 100% 0 0

Chromosomal Locations for CCDS 15135.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 87594889 87595089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87596538 87597476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1140 nt):
ATGGCGACCTGCCCTGTCCTGCAGAAGGAGACACTGTTCCGCACAGGCGTCCATGCTTACAGAATCCCTG
CTCTGCTCTACCTGAAGAAGCAGAAGACCCTGCTGGCCTTTGCGGAAAAGCGAGCCAGCAAGACGGATGA
GCACGCAGAGTTGATTGTCCTGAGAAGAGGAAGCTACAACGAAGCCACCAACCGTGTCAAGTGGCAGCCT
GAGGAAGTGGTGACCCAAGCCCAGCTGGAAGGCCACCGCTCCATGAATCCATGTCCCTTGTATGACAAGC
AAACAAAGACCCTCTTCCTTTTCTTCATCGCTGTCCCTGGGCGTGTATCAGAACATCATCAGCTCCACAC
TAAGGTTAATGTCACACGGCTGTGCTGTGTCAGCAGCACTGACCATGGGAGGACCTGGAGCCCCATCCAG
GACCTCACAGAGACCACCATTGGCAGCACTCATCAGGAATGGGCCACATTTGCTGTGGGTCCTGGGCATT
GTCTGCAGCTGCGGAACCCAGCTGGGAGCCTGCTGGTACCTGCTTATGCCTACCGGAAACTGCACCCTGC
TCAGAAGCCTACCCCCTTTGCCTTCTGCTTCATCAGCCTTGACCATGGGCACACATGGAAACTAGGCAAC
TTTGTGGCTGAAAACTCACTGGAGTGCCAGGTGGCTGAGGTTGGCACTGGAGCTCAGAGGATGGTATATC
TCAATGCTAGGAGCTTCCTGGGAGCCAGGGTCCAGGCACAAAGTCCTAATGATGGTCTGGATTTCCAGGA
CAACCGGGTAGTGAGTAAGCTTGTAGAGCCCCCCCACGGGTGTCATGGAAGTGTGGTTGCCTTCCACAAC
CCCATCTCTAAGCCACATGCCTTAGACACATGGCTTCTTTATACACACCCTACAGACTCCAGGAATAGAA
CCAACCTGGGTGTGTACCTAAACCAGATGCCACTAGATCCCACAGCCTGGTCAGAGCCCACCCTGCTGGC
CATGGGCATCTGTGCCTACTCAGACTTACAGAACATGGGGCAAGGCCCTGATGGCTCCCCACAGTTTGGG
TGTCTGTATGAATCAGGTAACTATGAAGAGATCATTTTCCTCATATTCACCCTGAAGCAAGCTTTCCCCA
CTGTATTTGATGCCCAGTGA

Translation (379 aa):
MATCPVLQKETLFRTGVHAYRIPALLYLKKQKTLLAFAEKRASKTDEHAELIVLRRGSYNEATNRVKWQP
EEVVTQAQLEGHRSMNPCPLYDKQTKTLFLFFIAVPGRVSEHHQLHTKVNVTRLCCVSSTDHGRTWSPIQ
DLTETTIGSTHQEWATFAVGPGHCLQLRNPAGSLLVPAYAYRKLHPAQKPTPFAFCFISLDHGHTWKLGN
FVAENSLECQVAEVGTGAQRMVYLNARSFLGARVQAQSPNDGLDFQDNRVVSKLVEPPHGCHGSVVAFHN
PISKPHALDTWLLYTHPTDSRNRTNLGVYLNQMPLDPTAWSEPTLLAMGICAYSDLQNMGQGPDGSPQFG
CLYESGNYEEIIFLIFTLKQAFPTVFDAQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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