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Report for CCDS15247.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15247.1 Public Mus musculus 1 Acmsd 23 108 98 CCDS HistoryNCBI Gene:266645Re-query CCDS DB by CCDS ID:15247.1Re-query CCDS DB by GeneID:266645See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15247.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038006.7 ENSMUSP00000048482.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038006.7Link to Ensembl Protein Viewer:ENSMUSP00000048482.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000038006Re-query CCDS DB by Protein ID:ENSMUSP00000048482
Original member NCBI NM_001033041.2 NP_001028213.1 Updated not alive Link to Nucleotide Sequence:NM_001033041.2Link to Protein Sequence:NP_001028213.1Re-query CCDS DB by Nucleotide ID:NM_001033041Re-query CCDS DB by Protein ID:NP_001028213
Current member NCBI NM_001033041.3 NP_001028213.1 Accepted alive Link to Nucleotide Sequence:NM_001033041.3Link to Protein Sequence:NP_001028213.1Re-query CCDS DB by Nucleotide ID:NM_001033041Re-query CCDS DB by Protein ID:NP_001028213Link to BLAST:NP_001028213.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028213.1 336 Q8R519 336 100% 0 0

Chromosomal Locations for CCDS 15247.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 127729486 127729542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127738551 127738595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127739943 127740039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127745776 127745825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127748989 127749225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127753788 127753881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127758004 127758099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127759659 127759831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127765880 127765978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127766283 127766345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1011 nt):
ATGAAAATTGACATCCACACTCATATTCTACCAAAGGAATGGCCCGATCTAGAAAAGAGGTTTGGCTATG
GAGGCTGGGTGCAGCTCCAACAGCAAGGCAAGGGAGAAGCAAAGATGATAAAAGATGGGAAGCTCTTCAG
AGTGATCCAACAGAACTGCTGGGACCCAGAAGTTCGTATCAGAGAAATGAACCAGAAAGGAGTGACAGTC
CAAGCTCTTTCCACAGTTCCTGTCATGTTTAGCTACTGGGCCAAACCTAAGGATACTTTGGAGCTGTGCC
AGTTTTTAAACAATGACCTAGCTGCCACCGTTGCCAGATACCCTCGAAGGTTTGTGGGTTTGGGGACGTT
GCCTATGCAAGCCCCGGAGCTGGCCGTCGAGGAGATGGAGCGTTGTGTTAAGGCGCTAGGATTTCCAGGA
ATCCAGATTGGCTCCCACATCAACACATGGGACCTGAATGACCCGGAACTCTTCCCAATCTATGCTGCGG
CCGAGAGGCTGAACTGTTCTCTGTTCGTGCATCCCTGGGATATGCAGATGGATGGACGAATGGCCAAATA
CTGGCTGCCTTGGCTCGTAGGAATGCCATCGGAGACCACCATGGCCATTTGCTCCATGATCATGGGTGGG
GTGTTTGAGAAGTTTCCCAAACTCAAAGTGTGCTTCGCACACGGAGGTGGTGCTTTCCCCTTCACCATAG
GAAGAATTGCCCATGGATTCAACATGCGCCCAGATCTCTGTGCCCAGGACAATCCGTCTGACCCCAGAAA
ATACCTTGGCTCCTTCTACACAGACTCCCTGGTTCACGATCCTCTGTCTCTCAAGCTATTGACAGATGTC
ATAGGAAAGGATAAAGTCATGCTGGGAACTGATTACCCCTTTCCTCTGGGCGAGCAGGAGCCTGGGAAGC
TGATAGAGTCCATGGCAGAGTTTGATGAAGAAACAAAGGATAAACTTACAGCTGGCAATGCCTTGGCTTT
TTTGGGTCTTGAGAGAAAACTATTTGAATGA

Translation (336 aa):
MKIDIHTHILPKEWPDLEKRFGYGGWVQLQQQGKGEAKMIKDGKLFRVIQQNCWDPEVRIREMNQKGVTV
QALSTVPVMFSYWAKPKDTLELCQFLNNDLAATVARYPRRFVGLGTLPMQAPELAVEEMERCVKALGFPG
IQIGSHINTWDLNDPELFPIYAAAERLNCSLFVHPWDMQMDGRMAKYWLPWLVGMPSETTMAICSMIMGG
VFEKFPKLKVCFAHGGGAFPFTIGRIAHGFNMRPDLCAQDNPSDPRKYLGSFYTDSLVHDPLSLKLLTDV
IGKDKVMLGTDYPFPLGEQEPGKLIESMAEFDEETKDKLTAGNALAFLGLERKLFE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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