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Report for CCDS15344.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15344.1 Public Mus musculus 1 Glrx2 23 108 98 CCDS HistoryNCBI Gene:69367Re-query CCDS DB by CCDS ID:15344.1Re-query CCDS DB by GeneID:69367See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15344.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111957.9 ENSMUSP00000107588.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111957.9Link to Ensembl Protein Viewer:ENSMUSP00000107588.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000111957Re-query CCDS DB by Protein ID:ENSMUSP00000107588
Original member Current member EBI ENSMUST00000129653.2 ENSMUSP00000121010.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000129653.2Link to Ensembl Protein Viewer:ENSMUSP00000121010.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000129653Re-query CCDS DB by Protein ID:ENSMUSP00000121010
Original member Current member EBI ENSMUST00000145969.7 ENSMUSP00000121665.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000145969.7Link to Ensembl Protein Viewer:ENSMUSP00000121665.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000145969Re-query CCDS DB by Protein ID:ENSMUSP00000121665
Original member Current member NCBI NM_001038593.1 NP_001033682.1 Accepted alive Link to Nucleotide Sequence:NM_001038593.1Link to Protein Sequence:NP_001033682.1Re-query CCDS DB by Nucleotide ID:NM_001038593Re-query CCDS DB by Protein ID:NP_001033682Link to BLAST:NP_001033682.1
Original member Current member NCBI NM_001038594.1 NP_001033683.1 Accepted alive Link to Nucleotide Sequence:NM_001038594.1Link to Protein Sequence:NP_001033683.1Re-query CCDS DB by Nucleotide ID:NM_001038594Re-query CCDS DB by Protein ID:NP_001033683Link to BLAST:NP_001033683.1
Original member Current member NCBI NM_023505.2 NP_075994.2 Accepted alive Link to Nucleotide Sequence:NM_023505.2Link to Protein Sequence:NP_075994.2Re-query CCDS DB by Nucleotide ID:NM_023505Re-query CCDS DB by Protein ID:NP_075994Link to BLAST:NP_075994.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001033682.1 123 Q923X4-2 123 100% 0 0
NP_001033683.1 123 Q923X4-2 123 100% 0 0
NP_075994.2 123 Q923X4-2 123 100% 0 0

Chromosomal Locations for CCDS 15344.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 143741649 143741711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 143745047 143745223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 143746508 143746639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (372 nt):
ATGGGAAACAGCACATCGTCGTTTTGGGGGAAGTCTACAACTACTCCTGTGAACCAGATCCAAGAAACAA
TTTCTAACAATTGTGTGGTGATCTTCTCAAAAACATCCTGCTCTTACTGTTCCATGGCCAAGAAGATTTT
CCATGACATGAATGTCAACTACAAGGCTGTGGAGTTGGATATGCTGGAATATGGCAACCAGTTTCAAGAT
GCGCTTCACAAGATGACTGGGGAAAGAACCGTTCCCAGGATATTTGTCAATGGACGATTTATTGGAGGCG
CAGCGGACACTCACAGGCTTCACAAAGAAGGGAAATTGCTGCCTCTGGTTCATCAGTGTTATTTAAAAAA
AAAACAAGAGGAAAGACATTGA

Translation (123 aa):
MGNSTSSFWGKSTTTPVNQIQETISNNCVVIFSKTSCSYCSMAKKIFHDMNVNYKAVELDMLEYGNQFQD
ALHKMTGERTVPRIFVNGRFIGGAADTHRLHKEGKLLPLVHQCYLKKKQEERH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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