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Report for CCDS15513.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15513.1 Public Mus musculus 1 Pigm 23 108 98 CCDS HistoryNCBI Gene:67556Re-query CCDS DB by CCDS ID:15513.1Re-query CCDS DB by GeneID:67556See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15513.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052455.3 ENSMUSP00000052838.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052455.3Link to Ensembl Protein Viewer:ENSMUSP00000052838.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000052455Re-query CCDS DB by Protein ID:ENSMUSP00000052838
Original member Current member NCBI NM_026234.4 NP_080510.1 Accepted alive Link to Nucleotide Sequence:NM_026234.4Link to Protein Sequence:NP_080510.1Re-query CCDS DB by Nucleotide ID:NM_026234Re-query CCDS DB by Protein ID:NP_080510Link to BLAST:NP_080510.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080510.1 423 Q8C2R7 423 100% 0 0

Chromosomal Locations for CCDS 15513.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 172376699 172377970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1272 nt):
ATGAGCTACCCCATGCACTGGGGGGAATGGATCCTGAACTTTCGGGTGCCGCCCGCCGGGGTGTTCGGCG
TGGCCTTCCTGGCCCGGGTCGCCCTGGTTTTCTACGGTGTCTTCCAGGACCGGACTCTGCTGGTGAGGTA
CACCGACATAGACTACCACGTGTTCACGGACGCCGCGCGCTTCGTCACGGAAGGGCGCTCCCCGTACCTG
CGGGCGACCTACCGCTACACCCCGCTCCTGAGCTGGCTCCTCACCCCCAACGTCTACCTCAGCGAACTCT
TCGGCAAGTTTCTCTTCATCAGCTGCGATCTCCTCACCGCCTTCCTCCTGTACCGCCTGCTGCTGCTCAA
GGGGCTGGGGCGCCGCCAAGCCTGTGGCTACTGCGTCTTCTGGCTTCTCAACCCTTTGCCCATGGCGGTG
TCCAGCCGGGGCAACGCGGACTCCATCGTCGCCTCCCTGGTTCTCTCGACCCTGTACTTCATAGAGAAAC
GGCTCATCGCGTGCGCCGCGGTGTTCTATGGCTTCGCGGTGCACATGAAGATGTACCCGGTGACCTACAT
CCTCCCCATAGCGCTCCATCTGCGGCCCGAGCGCGACGATGACGAGCGTCTCCGGCAAGCCCGGTTCTCT
TTCCAGGCTCGTTTGTACGACTTCCTGAGGAGGCTGTGTAGCTGGGCAGTGCTGCTTTTCGTAGCAGTTG
CAGGGCTCACGTTTGTTGCCCTGAGCTTCGGTTTTTACTATAAGTACGGTTGGGAGTTTTTGGAGCACAC
CTACTTTTATCACCTAACTAGGAGGGATATCCGCCATAATTTCTCTCCGTACTTCTATATGCTGTATTTG
ACTGCCGAGAGCAAGTGGAGTTTTACTCTGGGGATTGCGGCGTTCCTGCCACAGTTCATCTTGCTGTCAG
CCGCATCTTTCGCCTACTACAGAGACCTTGTCTTCTGCTGTTTCCTTCATACGTCCATTTTTGTGACTTT
TAACAAAGTCTGCACCTCTCAGTACTTTCTTTGGTATCTCTGCCTTCTGCCTCTGGTGATGCCACTGGTG
AGGATGCCTTGGAAAAGAGCCGTAGTCCTCTTACTGTTCTGGTTCATAGGACAGGCCTTATGGCTGGCTC
CTGCATATGTTCTAGAGTTTCAAGGAAAGAACACCTTCCTGTTTATTTGGTTAGCCGGTTTGTTCTTCCT
TCTGATCAACTGTTCCATACTGATTCAGATTATTTCCCATTACAAGGAGGACCGCCTAACGGAGAGAATC
AAATACGACTAA

Translation (423 aa):
MSYPMHWGEWILNFRVPPAGVFGVAFLARVALVFYGVFQDRTLLVRYTDIDYHVFTDAARFVTEGRSPYL
RATYRYTPLLSWLLTPNVYLSELFGKFLFISCDLLTAFLLYRLLLLKGLGRRQACGYCVFWLLNPLPMAV
SSRGNADSIVASLVLSTLYFIEKRLIACAAVFYGFAVHMKMYPVTYILPIALHLRPERDDDERLRQARFS
FQARLYDFLRRLCSWAVLLFVAVAGLTFVALSFGFYYKYGWEFLEHTYFYHLTRRDIRHNFSPYFYMLYL
TAESKWSFTLGIAAFLPQFILLSAASFAYYRDLVFCCFLHTSIFVTFNKVCTSQYFLWYLCLLPLVMPLV
RMPWKRAVVLLLFWFIGQALWLAPAYVLEFQGKNTFLFIWLAGLFFLLINCSILIQIISHYKEDRLTERI
KYD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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