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Report for CCDS15548.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15548.1 Public Mus musculus 1 Kmo 23 108 98 CCDS HistoryNCBI Gene:98256Re-query CCDS DB by CCDS ID:15548.1Re-query CCDS DB by GeneID:98256See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 15548.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040250.14 ENSMUSP00000038914.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040250.14Link to Ensembl Protein Viewer:ENSMUSP00000038914.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000040250Re-query CCDS DB by Protein ID:ENSMUSP00000038914
Original member Current member NCBI NM_133809.1 NP_598570.1 Accepted alive Link to Nucleotide Sequence:NM_133809.1Link to Protein Sequence:NP_598570.1Re-query CCDS DB by Nucleotide ID:NM_133809Re-query CCDS DB by Protein ID:NP_598570Link to BLAST:NP_598570.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598570.1 479 Q91WN4-1 479 100% 0 0

Chromosomal Locations for CCDS 15548.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 175632220 175632273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175637509 175637578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175637887 175637984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175639100 175639189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175643558 175643606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175647113 175647200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175649152 175649317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175650565 175650636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175651587 175651708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175653527 175653674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175655069 175655126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175656721 175656803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175658321 175658422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175658513 175658572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175659643 175659822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1440 nt):
ATGGCATCGTCTGATACTCAGGGGAAAAGAGTGGCTGTTATTGGCGGTGGTTTGGTTGGAGCACTGAATG
CCTGCTTTCTTGCAAAGAGGAATTTTCAAGTTGATGTGTACGAAGCTAGGGAAGATATTCGCGTGGCTAA
ATCTGCACGTGGAAGGAGCATTAACTTGGCCCTTTCTTATAGAGGACGGCAGGCCTTGAAAGCCATTGGT
CTGGAAGATCAGATCGTTTCCAAAGGTGTGCCCATGAAAGCCAGAATGATCCACTCTCTTTCGGGAAAGA
AGTCTGCAATTCCCTATGGGAACAAGTCACAGTATATCCTTTCAATAAGCAGAGAAAACTTAAACAAGGA
CCTGCTGACTGCCGTGGAGTCCTATGCCAATGCGAAGGTGCACTTTGGCCACAAGCTGTCGAAATGCATT
CCGGAGGAAGGGGTACTCACAGTGCTCGGACCTGACAAGGTTCCCCGAGATGTCACATGTGACCTTGTTG
TAGGGTGTGATGGAGCCTATTCAACTGTCAGAGCCCACCTCATGAAGAAGCCCCGCTTTGATTACACTCA
GCAATATATCCCTCATGGATACATGGAGTTGACAATTCCACCTAAGAATGGGGAGTACGCCATGGAACCT
AACTGTCTTCACATTTGGCCTAGAAATGCCTATATGATGATCGCCCTTCCAAACATGGACAAATCTTTCA
CATGCACCTTGTTCATGCCCTTTGAGGAGTTTGAAAGACTTCCAACGCGCAGCGATGTGCTGGACTTCTT
CCAGAAGAACTTTCCAGATGCTATCCCTCTGATGGGAGAGCAAGCCCTCATGAGAGATTTCTTTCTGTTG
CCTGCCCAGCCCATGATATCAGTGAAGTGCTCTCCCTTCCACCTGAAGTCACACTGTGTGCTGATGGGAG
ATGCCGCTCATGCCATTGTCCCATTTTTTGGGCAAGGAATGAATGCGGGCTTTGAAGACTGCTTGGTGTT
TGATGAATTGATGGACAAATTCAATAATAATCTTAGTATGTGCCTTCCTGAATTCTCAAGATTTAGGATC
CCAGATGACCATGCAATTTCAGACCTATCTATGTACAATTACATAGAGATGCGAGCGCATGTCAACTCTA
GGTGGTTCCTGTTCCAAAAGCTCCTGGATAAATTTCTTCACGCGATCATGCCCTCTACCTTTATCCCTCT
CTATACCATGGTCGCCTTCACCAGAATAAGATACCACGAGGCAGTGCTGCGTTGGCATTGGCAAAAAAAG
GTGATAAACAGAGGACTCTTTGTCCTTGGGTCCCTGATAGCCATTGGAGGCACCTACCTACTTGTGCACC
ATCTGTCCCTGAGACCTCTGGAGTTCTTGAGAAGACCTGCCTGGATGGGAACCACTGGCTACTGGACTAG
GAGTACAGACATTTCTCTGCAAGTTCCATGGAGTTACTAG

Translation (479 aa):
MASSDTQGKRVAVIGGGLVGALNACFLAKRNFQVDVYEAREDIRVAKSARGRSINLALSYRGRQALKAIG
LEDQIVSKGVPMKARMIHSLSGKKSAIPYGNKSQYILSISRENLNKDLLTAVESYANAKVHFGHKLSKCI
PEEGVLTVLGPDKVPRDVTCDLVVGCDGAYSTVRAHLMKKPRFDYTQQYIPHGYMELTIPPKNGEYAMEP
NCLHIWPRNAYMMIALPNMDKSFTCTLFMPFEEFERLPTRSDVLDFFQKNFPDAIPLMGEQALMRDFFLL
PAQPMISVKCSPFHLKSHCVLMGDAAHAIVPFFGQGMNAGFEDCLVFDELMDKFNNNLSMCLPEFSRFRI
PDDHAISDLSMYNYIEMRAHVNSRWFLFQKLLDKFLHAIMPSTFIPLYTMVAFTRIRYHEAVLRWHWQKK
VINRGLFVLGSLIAIGGTYLLVHHLSLRPLEFLRRPAWMGTTGYWTRSTDISLQVPWSY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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