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Report for CCDS15695.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15695.1 Public Mus musculus 2 Trdmt1 23 108 98 CCDS HistoryNCBI Gene:13434Re-query CCDS DB by CCDS ID:15695.1Re-query CCDS DB by GeneID:13434See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15695.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000124488.6 ENSMUSP00000114572.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000124488.6Link to Ensembl Protein Viewer:ENSMUSP00000114572.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000124488Re-query CCDS DB by Protein ID:ENSMUSP00000114572
Original member NCBI NM_010067.4 NP_034197.3 Updated not alive Link to Nucleotide Sequence:NM_010067.4Link to Protein Sequence:NP_034197.3Re-query CCDS DB by Nucleotide ID:NM_010067Re-query CCDS DB by Protein ID:NP_034197
Current member NCBI NM_010067.5 NP_034197.3 Accepted alive Link to Nucleotide Sequence:NM_010067.5Link to Protein Sequence:NP_034197.3Re-query CCDS DB by Nucleotide ID:NM_010067Re-query CCDS DB by Protein ID:NP_034197Link to BLAST:NP_034197.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034197.3 415 O55055 415 100% 0 0

Chromosomal Locations for CCDS 15695.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 13511518 13511690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 13516015 13516144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 13516659 13516716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 13519756 13520099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 13521263 13521346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 13522078 13522147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 13522824 13522889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 13523426 13523497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 13525618 13525694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 13533384 13533493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 13544569 13544632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1248 nt):
ATGGAACCTCTGCGTGTCCTGGAGCTGTACAGTGGCATTGGTGGCATGCACCACGCGCTGCGAGAAAGTC
ATATCCCTGCACATGTGGTGGCTGCTATTGATGTGAATACTGTTGCTAATGAAGTATACAAGCATAATTT
TCCTCATACTCACTTACTGTCAAAGACAATTGAAGGTATTTCACTGGAAGACTTTGACAAGCTATCTTTC
AATATGATTTTAATGAGCCCTCCATGCCAGCCATTCACAAGAATTGGCCTACAGGGGGATATGACCGATC
CAAGGACAACTAGCTTCTTGTATATTCTAGATATTCTCCCAAGATTACAAAAATTACCCAAGTATATTCT
CTTAGAAAATGTCAAAGGTTTTGAAGTATCTTCTACAAGAGGGCTGCTGATACAAACAATAGAAGCCTGT
GGCTTTCAGTATCAAGAGTTTCTATTGTCTCCTTCTTCTCTAGGCATTCCAAACTCGAGGCTCCGATATT
TTCTCATTGCAAAGCTTCAGTCAGAGCCTTTCCCCTTCCAGGCCCCTGGACAGATACTGATGGAGTTTCC
TAAAATTGTAACTGTTGAGCCACAAAAATATGCAGTAGTTGAAGAAAGTCAGCCAAGAGTGCAGAGAACT
GGACCACGTATCTGTGCTGAGAGCAGCAGCACACAGAGTTCTGGAAAAGATACCATTCTCTTTAAGCTTG
AGACTGTAGAAGAAAGGGACAGGAAACATCAACAAGACAGTGACCTCTCTGTGCAGATGCTGAAAGACTT
CCTTGAAGATGGCGACACAGATGAGTACCTTTTACCACCCAAGTTATTGCTGCGATACGCTCTCTTACTA
GATATCGTGAAGCCCACGTCCAGAAGGTCCATGTGCTTTACGAAAGGGTATGGGAGTTACATAGAGGGGA
CAGGCTCCGTGTTACAGGCTGCAGAGGATGCGCAGATTGAGAATATCTACAAATCTCTTCCTGATTTGCC
ACCAGAAGAAAAGATAGCTAAATTGTCAATGCTTAAACTGCGATATTTCACACCGAAAGAAATTGCAAAT
CTCCAGGGATTTCCTCCAGAATTTGGGTTTCCTGAGAAGACAACAGTGAAACAGCGTTACCGGCTGCTTG
GCAATAGCCTCAACGTGCATGTGGTAGCAAAACTCCTCACAGTCCTGTGTGAAGGATTTGGAAATGCCTC
TGAGAGCTGTCACAAGATGCCGCTAATTCTAGATAGTAATTCCAAGATTCTATCTTGA

Translation (415 aa):
MEPLRVLELYSGIGGMHHALRESHIPAHVVAAIDVNTVANEVYKHNFPHTHLLSKTIEGISLEDFDKLSF
NMILMSPPCQPFTRIGLQGDMTDPRTTSFLYILDILPRLQKLPKYILLENVKGFEVSSTRGLLIQTIEAC
GFQYQEFLLSPSSLGIPNSRLRYFLIAKLQSEPFPFQAPGQILMEFPKIVTVEPQKYAVVEESQPRVQRT
GPRICAESSSTQSSGKDTILFKLETVEERDRKHQQDSDLSVQMLKDFLEDGDTDEYLLPPKLLLRYALLL
DIVKPTSRRSMCFTKGYGSYIEGTGSVLQAAEDAQIENIYKSLPDLPPEEKIAKLSMLKLRYFTPKEIAN
LQGFPPEFGFPEKTTVKQRYRLLGNSLNVHVVAKLLTVLCEGFGNASESCHKMPLILDSNSKILS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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