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Report for CCDS15754.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15754.1 Public Mus musculus 2 Slc34a3 23 108 98 CCDS HistoryNCBI Gene:142681Re-query CCDS DB by CCDS ID:15754.1Re-query CCDS DB by GeneID:142681See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15754.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006638.7 ENSMUSP00000006638.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006638.7Link to Ensembl Protein Viewer:ENSMUSP00000006638.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000006638Re-query CCDS DB by Protein ID:ENSMUSP00000006638
Original member Current member NCBI NM_080854.3 NP_543130.2 Accepted alive Link to Nucleotide Sequence:NM_080854.3Link to Protein Sequence:NP_543130.2Re-query CCDS DB by Nucleotide ID:NM_080854Re-query CCDS DB by Protein ID:NP_543130Link to BLAST:NP_543130.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_543130.2 601 Q80SU6 601 100% 0 0

Chromosomal Locations for CCDS 15754.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 25229051 25229515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25230573 25230697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25230773 25230889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25230976 25231143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25231223 25231310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25231421 25231510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25231668 25231863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25231951 25232062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25232147 25232290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25232380 25232508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25232968 25233054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25233303 25233387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1806 nt):
ATGCCGAATTCCCTCGCCGGTGGCCAGGTCCCCAACCCTACTCTGGATGCCTTTGACCTGGTGGACCGGA
GTCTGAGAAATGCAGGAATCTCCGGTTCCATTCCAGGCTTGGAAGAGGGAGGTACAGATCCCTGGACCTT
CTCTCCGCTGAAGAACGCTGACCAACTGAAAGAGGTTGGCATGGCCAGCAGGCTTCGCCGGGTGGTCAGC
AGCTTTCTCAAGGCATGTGGACTCCTGGGAAGCCTCTACTTTTTCATCTGCTCCCTGGACATCCTCAGCT
CTGCTTTCCAGCTACTAGGCAGCAAAATGGCTGGAGACATTTTCAAGGACAATGTGGTGCTGTCCAACCC
TGTGGCGGGCTTGGTCATTGGTGTGCTGGTCACAGTCCTTGTCCAGAGCTCCAGCACATCTTCCTCTATC
GTGGTCAGCATGGTGGCCTCTAAGTTGCTGACTGTCCAGGTGTCTGTGCCTATCATCATGGGCGTCAATG
TGGGTACTTCGATCACCAGCACCCTGGTCTCAATGGCGCAGTCAGGGGACCGGGATGAATTTCAGAGGGC
CTTCAGCGGCTCGGCCGTGCATGGCATCTTCAACTGGCTCACAGTATTGGTATTGCTGCCGCTGGAGAGT
GCCACCGCAGCATTAGAGAGACTGAGTGAGCTGGCCCTGGGTGCTGCTAGCCTGCAGCCAGGGCAGCAGG
CCCCCGACATCCTCAAGGCACTGACTCGGCCTTTCACACACCTCATCATCCAGCTGGATAGCAGTGTGAT
AACCAGCGGTATTACCAGCAACACCACTAACAGCAGCCTGATTAAGCATTGGTGTGGCTTCAGGGGGGAG
ACGCCCCAGGGAAGCAGTGAGGGATGTGGCCTCTTCAGCTCTTGCACAGAGAGGAACAGCTCAGCATCTC
CAGAGGAGGACAGATTGCTCTGCCATCACCTGTTTGCCGGCTCAAAACTCACAGACTTGGCTGTGGGCTT
CATCCTGCTGGCGGGCTCGCTGCTGGTGCTCTGTGTCTGTCTGGTCCTCATCGTTAAACTGCTCAACTCT
GTGTTGAAGGGCCGCATCGCACAGGCTGTGAAGACTGTTATCAATGCAGATTTTCCCTTCCCCTTTGGCT
GGCTCAGCGGCTACTTGGCTATCCTCGTTGGCGCAGGCCTAACCTTCTTGCTTCAGAGCAGTAGTGTCTT
CACAGCAGCCATCGTGCCTCTCATGGGGGTTGGGGTGATTGACCTGGAACGGGCCTACCCCCTCTTCTTG
GGTTCCAACATCGGCACCACCACCACAGCCCTGCTGGCTGCCTTAGCCAGCCCTGCAGACATGTTAATCT
TCGCAGTTCAGGTTGCTCTCATCCACTTCTTCTTCAACCTGGCTGGCATACTGCTGTGGTACCTGGTGCC
TGTCTTGAGACTGCCAATTCCACTGGCCAAGCGCTTTGGAAACCTGACTGCCCAGTATCGCTGGGTGGCC
ATTGTCTACCTACTATTAACCTTCCTGCTGCTACCCCTAGCAGCCTTTGGACTTTCCCTGGCAGGGGGCA
CAGTGCTGGCTGCAGTAGGGGGTCCTCTGGTGGGGCTGGTGCTCCTTATCATCCTGGTTAATGTCCTGCA
ACAACACCGACCATCTTGGCTGCCCCGCTGTCTTCAATCCTGGGCCTGGCTGCCACTCTGGCTCCATTCT
CTGGAGCCCTGGGACCGCCTGGTGACTGCTTGTTGCCCCTGCAGGGCCTGCAGCAACTCTCCTATGACCA
GCAAAGTGGCTCACTGCTATGAGAACCCACAAGTCATAGCTTCTCAGCAGTTGTGA

Translation (601 aa):
MPNSLAGGQVPNPTLDAFDLVDRSLRNAGISGSIPGLEEGGTDPWTFSPLKNADQLKEVGMASRLRRVVS
SFLKACGLLGSLYFFICSLDILSSAFQLLGSKMAGDIFKDNVVLSNPVAGLVIGVLVTVLVQSSSTSSSI
VVSMVASKLLTVQVSVPIIMGVNVGTSITSTLVSMAQSGDRDEFQRAFSGSAVHGIFNWLTVLVLLPLES
ATAALERLSELALGAASLQPGQQAPDILKALTRPFTHLIIQLDSSVITSGITSNTTNSSLIKHWCGFRGE
TPQGSSEGCGLFSSCTERNSSASPEEDRLLCHHLFAGSKLTDLAVGFILLAGSLLVLCVCLVLIVKLLNS
VLKGRIAQAVKTVINADFPFPFGWLSGYLAILVGAGLTFLLQSSSVFTAAIVPLMGVGVIDLERAYPLFL
GSNIGTTTTALLAALASPADMLIFAVQVALIHFFFNLAGILLWYLVPVLRLPIPLAKRFGNLTAQYRWVA
IVYLLLTFLLLPLAAFGLSLAGGTVLAAVGGPLVGLVLLIILVNVLQQHRPSWLPRCLQSWAWLPLWLHS
LEPWDRLVTACCPCRACSNSPMTSKVAHCYENPQVIASQQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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