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Report for CCDS15826.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15826.1 Public Mus musculus 2 Sardh 23 108 98 CCDS HistoryNCBI Gene:192166Re-query CCDS DB by CCDS ID:15826.1Re-query CCDS DB by GeneID:192166See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15826.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102886.9 ENSMUSP00000099950.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102886.9Link to Ensembl Protein Viewer:ENSMUSP00000099950.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102886Re-query CCDS DB by Protein ID:ENSMUSP00000099950
Original member Current member NCBI NM_138665.2 NP_619606.1 Accepted alive Link to Nucleotide Sequence:NM_138665.2Link to Protein Sequence:NP_619606.1Re-query CCDS DB by Nucleotide ID:NM_138665Re-query CCDS DB by Protein ID:NP_619606Link to BLAST:NP_619606.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_619606.1 919 Q99LB7 919 100% 0 0

Chromosomal Locations for CCDS 15826.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 27189519 27189644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27191879 27192014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27196649 27196817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27197529 27197691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27211011 27211104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27215038 27215185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27218798 27218911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27220643 27220781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27224969 27225082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27227077 27227160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27228244 27228385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27230438 27230528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27230771 27230857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27234291 27234420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27235478 27235582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27239367 27239467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27239615 27239738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27241386 27241565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27242702 27242880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27244169 27244502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2760 nt):
ATGGCTTCACTGAGCCGGGTCCTACGTGTAGCTGCCACCTGTCCTCGAGGGAGAGCTGCTTGGAATCTGG
GGCTACAACCCCTAGCCACAGAGGCCAGGCCCACCACCGAGAAGAGTGTTCCTTATCAGCGGACCCTGAA
GGAGGAGGCCCAAGGTGCCTCCGTGGTGCCCCAAGGACCAAGCCAGCCCCTGCCTAGCACAGCCAATGTT
GTGGTCATCGGTGGGGGCAGTTTGGGCTGCCAGACTCTGTATCACTTGGCTAAGCTGGGTGTAGGTGGAG
CCGTGCTGCTGGAGAGAGAGCGACTGACCTCTGGGACCACCTGGCACACAGCAGGCTTACTGTGGCAGCT
GCGGCCCAGCGATGTGGAGGTAGAGCTTTTGGCTCACACACGGCAAGTGGTGAGCCGTGATCTGGAAGAG
GAGACTGGGCTGCATACAGGCTGGATCCAGAATGGTGGCCTCTTCATCGCCTCTAACCAGCAACGCCTGA
ATGAATACAAGAGGCTCATGTCGTTGGGCAAGGCCTATGGTATAGAATCCCACGTGCTGAGCCCAGCAGA
GACCAAGAGTCTATATCCGCTGATGAACGTGGACGACCTCTATGGGACCCTGTATGTGCCACAGGATGGT
ACCATGGACCCCGCTGGCACCTGTACTACCCTCACCAGAGCAGCAGTGGCTCGAGGAGCTCAGGTCATTG
AAAACTGTGCGGTGACTGGCATCCGTGTGCGGACGGACGACTTTGGAGTGCGGCGGGTGGCAGCTGTGGA
GACAGAGCATGGCTCCATCCAGACACCCTGTGTGGTCAACTGTGCAGGAGTGTGGGCGAGCAAGGTGGGC
CGCATGGCTGGAGTGAAGGTCCCGCTGGTGGCCATGCACCATGCTTACGTCGTCACTGAGCGCATCGAGG
GGATCCAGAACATGCCCAATGTCCGGGATCACGATGCTTCTGTCTACCTCCGACTGCAGGGGGATGCCTT
GTCTGTGGGTGGCTATGAGGCCAACCCTATCTTTTGGGAGGAGGTGTCAGACAAATTTGCCTTTGGCCTC
TTTGACCTGGACTGGGATGTGTTCACCCAGCACATTGAAGGCGCCATTAACCGTGTCCCTGTGTTGGAGA
AGACGGGGATCAAGTCCACTGTCTGTGGTCCTGAATCCTTCACACCTGACCATAAGCCCCTGATGGGGGA
GGCTCCTGAACTCCGTGGCTTCTTCCTTGGCTGTGGCTTCAACAGTGCAGGCATGATGTTGGGTGGTGGC
TGTGGACAAGAGCTGGCCCATTGGATTGTGCACGGGCGCCCAGAGAAGGACATGTACAGCTATGACATCA
GGCGTTTCCATCACTCGCTCACGGACCACACCCGCTGGATCCGAGAGCGCAGCCATGAGTCCTATGCCAA
GAACTACTCGGTTGTCTTCCCACACGATGAGCCACTGGCAGGACGCAACATGAGGAGAGACCCCCTGCAT
GAGGAGCTGCTTGGACAAGGCTGTGTGTTTCAAGAGCGACAGGGATGGGAACGGCCGGGATGGTTCAACC
CCCAGGAAACAGCTCAGGTCCTTGACTACGACTACTACGGGGCCTACGGAAACCAGGCACACAAGGACTA
CACCTACAGCAGGTTGCTAGGCGATGAGTACACCTTCGACTTCCCACCCCACCACCACATGATCCAGAAG
GAATGTCTGGCCTGCAGAGGGGCTGCTGCTGTGTTCAACATGTCTTACTTTGGGAAGTTCTACCTGCTCG
GGGTGGACGCCAGGAAGGCTGCAGACTGGCTCTTCTCAGCAGATGTCAACCGACCCCCAGGCTCAACAGT
GTACACATGCATGCTGAACCAACGGGGAGGCACTGAGAGCGACCTGACTGTTAGCCGATTGGCTCCTGGC
ACCCAGGCCAGTCCCCTGGTCCCTGCCTTTGAAGGGGATTGCTACTACCTGGCCGTGGGTGGGGCTGTGG
CCCAACACAACTGGTCCCACATAAACACGGTGCTACAGGACCAGGAGTTCCGGTGCCAGCTTATGGATAG
TTCTGAAGATCTGGGCATGCTCAGTATCCAGGGCCCAGCCAGCCGTGACATCCTGCAGGATGTGCTTGAT
GCTGACCTGAGCAACGAGGCCTTCCCCTTCTCCACCCACCAGCTGGTGAGAGCCGCCGGGCACCTGGTCC
GGGCCATCAGGCTGTCCTTTGTCGGGGAGCTGGGATGGGAGCTGCATGTACCCCGGGCATCCTGCTTGCC
AGTGTACCGGGCTGTGATGGCTGCAGGTGCGAGGCATGGCCTAGTCAACGCAGGCTACCGTGCCATCGAC
TCCCTGAGCATCGAGAAAGGCTATAGACACTGGCATGCAGACCTGAGGCCCGATGACAGCCCCCTGGAGG
CAGGATTGGCCTTCACCTGCAAACTCAAGACCTCGGTGCCCTTCCTAGGCCGAGAGGCCCTGGAGAAGCA
GCGTGCCACAGGTCTCCGCCGACGCCTGATATGCCTCACTGTGGAAGAGGAGGTGCCTATGTTTGGCCTG
GAGGCCATCTGGAGAAACGGCCAAGTGGTGGGCCATGTCCGGAGAGCTGACTTTGGATTTACTGTGAACA
AGACCATCGCCTATGGCTACATCCGAGACCCCAGTGGTGGCCCTGTCTCTCTGGACTTTGTGAAGAATGG
AGAGTATGCCTTGGAGAGAATGGGGGTCACCTATGCTGCCCAGGTTCACCTGAAGTCTCCCTTTGACCCT
GACAACAAGCGGGTGAAGGGAATCTATTGA

Translation (919 aa):
MASLSRVLRVAATCPRGRAAWNLGLQPLATEARPTTEKSVPYQRTLKEEAQGASVVPQGPSQPLPSTANV
VVIGGGSLGCQTLYHLAKLGVGGAVLLERERLTSGTTWHTAGLLWQLRPSDVEVELLAHTRQVVSRDLEE
ETGLHTGWIQNGGLFIASNQQRLNEYKRLMSLGKAYGIESHVLSPAETKSLYPLMNVDDLYGTLYVPQDG
TMDPAGTCTTLTRAAVARGAQVIENCAVTGIRVRTDDFGVRRVAAVETEHGSIQTPCVVNCAGVWASKVG
RMAGVKVPLVAMHHAYVVTERIEGIQNMPNVRDHDASVYLRLQGDALSVGGYEANPIFWEEVSDKFAFGL
FDLDWDVFTQHIEGAINRVPVLEKTGIKSTVCGPESFTPDHKPLMGEAPELRGFFLGCGFNSAGMMLGGG
CGQELAHWIVHGRPEKDMYSYDIRRFHHSLTDHTRWIRERSHESYAKNYSVVFPHDEPLAGRNMRRDPLH
EELLGQGCVFQERQGWERPGWFNPQETAQVLDYDYYGAYGNQAHKDYTYSRLLGDEYTFDFPPHHHMIQK
ECLACRGAAAVFNMSYFGKFYLLGVDARKAADWLFSADVNRPPGSTVYTCMLNQRGGTESDLTVSRLAPG
TQASPLVPAFEGDCYYLAVGGAVAQHNWSHINTVLQDQEFRCQLMDSSEDLGMLSIQGPASRDILQDVLD
ADLSNEAFPFSTHQLVRAAGHLVRAIRLSFVGELGWELHVPRASCLPVYRAVMAAGARHGLVNAGYRAID
SLSIEKGYRHWHADLRPDDSPLEAGLAFTCKLKTSVPFLGREALEKQRATGLRRRLICLTVEEEVPMFGL
EAIWRNGQVVGHVRRADFGFTVNKTIAYGYIRDPSGGPVSLDFVKNGEYALERMGVTYAAQVHLKSPFDP
DNKRVKGIY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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