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Report for CCDS16113.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16113.1 Public Mus musculus 2 Slc25a12 23 108 98 CCDS HistoryNCBI Gene:78830Re-query CCDS DB by CCDS ID:16113.1Re-query CCDS DB by GeneID:78830See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16113.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000151937.7 ENSMUSP00000122103.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000151937.7Link to Ensembl Protein Viewer:ENSMUSP00000122103.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000151937Re-query CCDS DB by Protein ID:ENSMUSP00000122103
Original member NCBI NM_172436.4 NP_766024.1 Updated not alive Link to Nucleotide Sequence:NM_172436.4Link to Protein Sequence:NP_766024.1Re-query CCDS DB by Nucleotide ID:NM_172436Re-query CCDS DB by Protein ID:NP_766024
Current member NCBI NM_172436.5 NP_766024.1 Accepted alive Link to Nucleotide Sequence:NM_172436.5Link to Protein Sequence:NP_766024.1Re-query CCDS DB by Nucleotide ID:NM_172436Re-query CCDS DB by Protein ID:NP_766024Link to BLAST:NP_766024.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766024.1 677 Q8BH59 677 100% 0 0

Chromosomal Locations for CCDS 16113.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 71275155 71275353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71276432 71276522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71276641 71276799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71279516 71279654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71282470 71282610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71293360 71293440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71293672 71293724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71296665 71296823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71298570 71298651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71308056 71308140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71311463 71311556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71312425 71312563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71314983 71315129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71323976 71324115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71333605 71333720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71343890 71344032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71366527 71366580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71367513 71367524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2034 nt):
ATGGCGGTCAAGGTGCATACAACCAAACGAGGTGATCCTCATGAGCTGAGAAACATATTCCTCCAGTATG
CCAGCACTGAGGTGGACGGGGAGCATTACATGACTCCAGAAGACTTCGTTCAACGCTATCTTGGCCTGTA
CAACGATCCAAACAGCAACCCAAAGATTGTGCAGCTCTTGGCAGGAGTAGCTGATCAAACCAAGGATGGG
TTGATCTCCTATCAAGAGTTTTTGGCATTTGAATCTGTTCTATGTGCTCCAGATTCCATGTTCATAGTGG
CTTTCCAACTGTTTGACAAGAGCGGAAATGGAGAGGTGACATTTGAAAATGTCAAGGAGATTTTTGGGCA
GACTATTATCCATCACCACATCCCTTTTAACTGGGACTGCGAGTTCATCCGGCTGCACTTTGGGCACAAC
CGCAAGAAGCACCTGAACTATGTGGAATTCACTCAGTTCCTCCAGGAATTGCAATTGGAACACGCAAGGC
AAGCCTTTGCACTGAAAGACAAGAGCAAAAGCGGCATGATCTCGGGTCTGGATTTCAGTGACGTCATGGT
CACCATCCGGTCCCACATGCTCACTCCTTTTGTGGAGGAGAACCTGGTCTCAGCTGCCGGAGGGGGTACC
TCACACCAAGTTAGCTTCTCCTACTTCAACGCATTTAACTCCTTACTCAACAACATGGAGCTTGTTCGAA
AGATCTATAGCACTTTAGCAGGCACGAGGAAAGATATTGAAGTCACCAAGGAGGAATTTGCCCAGAGCGC
CATACGCTATGGACAGGTCACTCCACTAGAAATTGATATCTTGTACCAGCTTGCAGACCTATATAATGCC
TCAGGGCGCTTGACTCTGGCAGACATCGAGAGAATAGCTCCGCTGGCCGAGGGGGCCTTACCTTACAACC
TGGCAGAGCTTCAGAGGCAGCAATCTCCTGGCTTGGGCAGACCTATCTGGCTCCAGATTGCCGAGTCTGC
ATACAGGTTCACTCTGGGCTCAGTTGCTGGAGCTGTGGGGGCCACTGCGGTGTACCCCATAGACCTGGTG
AAGACCCGGATGCAAAACCAGCGTGGTACGGGCTCTGTGGTCGGGGAGCTGATGTATAAAAACAGCTTCG
ACTGTTTTAAGAAAGTGTTGCGCTACGAGGGTTTCTTTGGACTGTACCGAGGTCTGATCCCACAGCTGAT
AGGGGTTGCACCAGAAAAAGCCATTAAGCTAACAGTTAATGATTTTGTCCGGGACAAATTTACCAAAAGA
GATGGCTCTATCCCACTGCCGGCGGAAATCCTTGCTGGAGGTTGCGCTGGAGGCTCGCAGGTCATCTTTA
CCAACCCTCTGGAGATAGTGAAGATCCGCCTGCAGGTAGCCGGAGAGATCACCACAGGACCGAGAGTCAG
TGCTCTGAATGTGCTTCAGGACCTGGGACTTTTCGGGCTGTACAAGGGTGCCAAAGCCTGTTTCCTCCGA
GACATTCCCTTCTCCGCAATCTATTTTCCCGTGTACGCTCACTGCAAACTCCTCCTGGCTGATGAGAACG
GACGCGTGGGAGGCATCAATCTCCTGACAGCGGGAGCCTTGGCAGGCGTACCTGCTGCTTCTCTGGTGAC
CCCTGCTGATGTCATCAAGACAAGACTGCAAGTGGCCGCCAGGGCCGGCCAGACAACATACAGCGGGGTC
GTCGACTGTTTCCGAAAGATTCTCCGGGAAGAAGGGCCCTCGGCATTTTGGAAAGGGACTGCAGCTCGGG
TGTTTCGATCCTCACCTCAGTTTGGTGTCACTCTGGTTACCTACGAGCTTCTGCAGCGGTGGTTTTACAT
AGATTTTGGAGGCCTCAAACCTTCTGGCTCAGAACCAACGCCAAAGTCCCGCATCGCAGACCTCCCTCCT
GCCAACCCCGATCACATCGGTGGCTACAGACTTGCCACGGCCACTTTCGCTGGCATTGAAAACAAGTTTG
GCCTTTACCTCCCCAAGTTTAAGTCTCCTAGCGTAGCTGTGGCTCAGCCCAAGGCGGCAGCAGCAGCCCA
ATGA

Translation (677 aa):
MAVKVHTTKRGDPHELRNIFLQYASTEVDGEHYMTPEDFVQRYLGLYNDPNSNPKIVQLLAGVADQTKDG
LISYQEFLAFESVLCAPDSMFIVAFQLFDKSGNGEVTFENVKEIFGQTIIHHHIPFNWDCEFIRLHFGHN
RKKHLNYVEFTQFLQELQLEHARQAFALKDKSKSGMISGLDFSDVMVTIRSHMLTPFVEENLVSAAGGGT
SHQVSFSYFNAFNSLLNNMELVRKIYSTLAGTRKDIEVTKEEFAQSAIRYGQVTPLEIDILYQLADLYNA
SGRLTLADIERIAPLAEGALPYNLAELQRQQSPGLGRPIWLQIAESAYRFTLGSVAGAVGATAVYPIDLV
KTRMQNQRGTGSVVGELMYKNSFDCFKKVLRYEGFFGLYRGLIPQLIGVAPEKAIKLTVNDFVRDKFTKR
DGSIPLPAEILAGGCAGGSQVIFTNPLEIVKIRLQVAGEITTGPRVSALNVLQDLGLFGLYKGAKACFLR
DIPFSAIYFPVYAHCKLLLADENGRVGGINLLTAGALAGVPAASLVTPADVIKTRLQVAARAGQTTYSGV
VDCFRKILREEGPSAFWKGTAARVFRSSPQFGVTLVTYELLQRWFYIDFGGLKPSGSEPTPKSRIADLPP
ANPDHIGGYRLATATFAGIENKFGLYLPKFKSPSVAVAQPKAAAAAQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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