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Report for CCDS16473.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16473.1 Public Mus musculus 2 Pdhx 23 108 98 CCDS HistoryNCBI Gene:27402Re-query CCDS DB by CCDS ID:16473.1Re-query CCDS DB by GeneID:27402See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16473.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000011058.8 ENSMUSP00000011058.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000011058.8Link to Ensembl Protein Viewer:ENSMUSP00000011058.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000011058Re-query CCDS DB by Protein ID:ENSMUSP00000011058
Original member Current member NCBI NM_175094.5 NP_780303.1 Accepted alive Link to Nucleotide Sequence:NM_175094.5Link to Protein Sequence:NP_780303.1Re-query CCDS DB by Nucleotide ID:NM_175094Re-query CCDS DB by Protein ID:NP_780303Link to BLAST:NP_780303.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780303.1 501 Q8BKZ9 501 100% 0 0

Chromosomal Locations for CCDS 16473.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 103022011 103022269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 103024165 103024229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 103028276 103028434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 103030278 103030336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 103033163 103033310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 103035215 103035389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 103041043 103041141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 103042194 103042393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 103046721 103046821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 103058497 103058577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 103073290 103073449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1506 nt):
ATGGCGGCCTCCTGGAGGCTTCACTGTAACCAGCCGCTGCTTCGGTACCTTCTGGGATTTAGCAGCCGTC
GAAGCCTGGGACTGGCTCAGGGTGCTGCTGCTTGGCCTGTCGACCGTGGAGCAAGTTGGAGGTGGTTTCA
CAGTACTCAGCTGCTGCAGGCGGATCCTATTAAGGTCCTAATGCCATCACTGTCTCCTACGATGGAGCAA
GGGAACATTGTGAAATGGCTGAGAAAGGAAGGTGAAGCTGTGAGTGCTGGAGACTCGTTATGTGAAATTG
AGACGGACAAGGCTGTGGTCACCTTAGATGCAAACGATGATGGCATCTTAGCCAAGATAGTGGTTGAGGA
AGGTGCTAAAAATATACAGCTGGGTTCACTCATTGCTTTGATGGTTGAAGAAGGGGAAGATTGGAAACAG
GTGGAAATTCCCAAGGATGTCAGTGCTCCACCTCCAGTCTCAAAACCACCAGCTCCTACTCAGCCCTCTC
CACAGCCGCAGATTCCTTGTCCCGCCAGGAAGGAGCACAAAGGGACGGCACGGTTCCGCTTAAGTCCAGC
TGCCCGCAACATTCTGGAAAAACATTCATTGGACGCCAGCCAGGGCACAGCCACAGGCCCTCGCGGGATC
TTCACTAAAGAAGATGCACTCAAGTTAGTCGAGCTGAAACAGATGGGCAAGATTACTGAATCCAGACCAG
CCTCAGCTCCTCCACCCTCTCTCTCAGCATCTGTGCCTCCTCAGGCTACAGCCGGGCCATCCTATCCTCG
GCCAATGACCCCACCAGTATCCATTCCTGGGCAACCGAATGCAGCGGGTACATTCACCGAAATTCCTGCT
AGCAATATTCGAAGAGTTATCGCTAAGAGGTTAACTGAATCAAAAAGTACTGTGCCTCATGCCTATGCTA
CTGCTGACTGTGACCTTGGCGCAGTTCTAAAGGTTAGACGAGATCTGGTCAAAGATGACATTAAAGTCTC
AGTAAATGACTTTATCATCAGAGCAGCAGCTGTTACTCTTAAACAAATGCCTGGGGTTAATGTCACCTGG
GATGGAGAAGGCCCAAAGCAGCTGCCCTCTGTTGACATTTCAGTGGCTGTGGCAACAGATAAAGGTTTAA
TTACACCAATCATAAAAGATGCAGCCGCTAAGGGCATTCAGGAGATCGCTGACTCTGTAAAGGTTCTGTC
GAAGAAAGCACGGGATGGGAAATTGATGCCAGAGGAGTACCAAGGAGGATCTTTTAGTATTTCCAACTTG
GGGATGTTTGGCATCGATGAGTTCGCTGCAGTGATTAACCCGCCTCAGGCCTGTATCTTGGCCGTTGGGA
GATTCCGCCCCGTGCTGAAGCTGACGGAGGATGAAGAGGGGAACCCTCAACTGCAGCAGCACCAGCTTAT
AACGGTCACAATGTCAAGTGACAGCCGAGTGGTTGATGATGAACTAGCTACCAGGTTTCTTGAAACTTTC
AAAGCAAACCTAGAGAATCCCATGCGACTTGGGTAG

Translation (501 aa):
MAASWRLHCNQPLLRYLLGFSSRRSLGLAQGAAAWPVDRGASWRWFHSTQLLQADPIKVLMPSLSPTMEQ
GNIVKWLRKEGEAVSAGDSLCEIETDKAVVTLDANDDGILAKIVVEEGAKNIQLGSLIALMVEEGEDWKQ
VEIPKDVSAPPPVSKPPAPTQPSPQPQIPCPARKEHKGTARFRLSPAARNILEKHSLDASQGTATGPRGI
FTKEDALKLVELKQMGKITESRPASAPPPSLSASVPPQATAGPSYPRPMTPPVSIPGQPNAAGTFTEIPA
SNIRRVIAKRLTESKSTVPHAYATADCDLGAVLKVRRDLVKDDIKVSVNDFIIRAAAVTLKQMPGVNVTW
DGEGPKQLPSVDISVAVATDKGLITPIIKDAAAKGIQEIADSVKVLSKKARDGKLMPEEYQGGSFSISNL
GMFGIDEFAAVINPPQACILAVGRFRPVLKLTEDEEGNPQLQQHQLITVTMSSDSRVVDDELATRFLETF
KANLENPMRLG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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