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Report for CCDS16552.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16552.1 Public Mus musculus 2 Slc12a6 23 108 98 CCDS HistoryNCBI Gene:107723Re-query CCDS DB by CCDS ID:16552.1Re-query CCDS DB by GeneID:107723See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16552.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053666.7 ENSMUSP00000051490.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053666.7Link to Ensembl Protein Viewer:ENSMUSP00000051490.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000053666Re-query CCDS DB by Protein ID:ENSMUSP00000051490
Original member Current member NCBI NM_133648.2 NP_598409.2 Accepted alive Link to Nucleotide Sequence:NM_133648.2Link to Protein Sequence:NP_598409.2Re-query CCDS DB by Nucleotide ID:NM_133648Re-query CCDS DB by Protein ID:NP_598409Link to BLAST:NP_598409.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598409.2 1099 Q924N4-2 1099 100% 0 0

Chromosomal Locations for CCDS 16552.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 112284688 112284805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112316241 112316285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112333383 112333477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112334369 112334500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112335776 112335922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112337358 112337412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112337859 112337989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112339246 112339487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112341831 112342045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112343829 112343987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112344139 112344237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112344488 112344545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112346899 112347073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112347317 112347435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112349276 112349374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112351279 112351398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112352444 112352548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112352892 112353060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112354174 112354369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112354975 112355144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112356460 112356591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112357484 112357591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112357768 112357952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112358506 112358639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112360416 112360507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3300 nt):
ATGCCGCACTTCACTGTGACCAAGGTAGAAGACCCAGAGGAGGGGGCAGCTGGCCCCCTCTCTCCTGAGC
CCAGCTCAGCAGAAGTAAAAGCCCGGATTCAGGATCCCCAAGAACCAGACCCGAGTCAGAACTCCATCAC
AGGGGAGCACAGCCAGCTGTTAGATGACGGCCATAAAAAAGCCCGAAATGCTTATCTCAATAATTCCAAC
TATGAAGAAGGAGACGAATATTTTGATAAAAATTTGGCACTCTTTGAGGAAGAAATGGACACCAGACCAA
AGGTGTCTTCTCTCCTCAACCGCATGGCCAACTATACAAATCTGACACAAGGAGCAAAGGAACATGAAGA
GGCAGAGAACATCACTGAAGGGAAAAAGAAGCCTACCAAGAGCCCCCAAATGGGTACTTTCATGGGTGTC
TACCTCCCATGTCTACAGAACATCTTTGGAGTGATCCTCTTCCTGCGTCTTACCTGGGTAGTGGGAACAG
CTGGAATCCTTCAGGCCTTTGCAATTGTCCTCATCTGCTGCTGCTGTACAATGTTAACTGCCATCTCCAT
GAGCGCCATCGCCACTAACGGAGTGGTGCCAGCTGGGGGCTCATACTTCATGATTTCCAGAGCCCTGGGC
CCAGAGTTTGGCGGGGCTGTAGGCCTCTGCTTTTATCTTGGCACCACATTTGCAGCAGCCATGTATATTC
TTGGTGCCATTGAAATCTTTCTGGTATACATTGTCCCCCGAGCTGCCATCTTTCGGAGTGACGATGCACT
CAAGGAGTCAGCAGCTATGCTGAACAACATGCGCGTCTATGGTACAGCCTTCTTGGTCCTCATGGTCTTG
GTGGTATTCATCGGCGTACGCTATGTGAATAAGTTTGCCTCACTCTTCCTGGCCTGTGTAATTGTGTCGA
TCTTGGCTATCTATGCTGGTGCCATCAAGTCTTCCTTTGCTCCACCACACTTCCCGGTCTGTATGCTGGG
CAACCGTACCCTGTCATCAAGACACCTTGACATTTGCTCTAAGACCAAGGAGGTTGACAACATGACAGTA
CCATCAAAGTTATGGGGATTCTTCTGCAACTCGAGTCAGTTCTTTAATGCCACCTGTGATGAGTACTTTG
TTCACAATAACGTCATCTCAATCCAAGGCATTCCAGGGTTGGCTAGTGGTATCATTACTGAAAATCTTTG
GAGTAATTATTTACCAAAGGGTGAGATAATTGAAAAGCCATCAGCCAAGTCATCTGATGTCTTAGGCAAC
TTAAACCATGAATATGTTCTTGCTGATATCACCACCTCCTTCACTCTGCTGGTGGGGATCTTCTTTCCCT
CGGTCACAGGTATCATGGCTGGGTCAAACAGATCTGGAGATCTGAAAGATGCCCAGAAGTCTATTCCCAT
TGGGACCATCCTTGCCATCCTGACCACATCCTTTGTGTATTTAAGCAATGTTGTCCTTTTTGGTGCATGT
ATTGAAGGAGTCGTTCTCAGAGACAAATTTGGGGATGCTGTAAAAGGGAATTTGGTTGTAGGCACCTTAT
CCTGGCCATCCCCGTGGGTGATCGTTATTGGCTCCTTCTTTTCAACATGTGGGGCTGGGCTGCAGAGCCT
CACAGGTGCGCCTCGGCTGCTGCAGGCTATCGCCAAGGATAACATCATACCTTTCCTTAGGGTTTTTGGT
CACAGCAAAGCTAATGGGGAACCTACCTGGGCTTTACTTCTAACTGCTGCCATAGCAGAGCTGGGAATTC
TCATCGCCTCCCTGGATCTCGTGGCCCCAATTCTTTCCATGTTTTTTCTCATGTGTTACCTCTTTGTGAA
CTTGGCTTGTGCCTTGCAAACATTGCTGCGAACCCCCAACTGGAGGCCTCGATTCCGCTATTATCACTGG
GCCCTCTCTTTCATGGGAATGAGTATCTGTCTAGCTCTGATGTTCATTTCTTCTTGGTATTATGCCATTG
TAGCTATGGTAATAGCTGGCATGATCTACAAGTACATTGAATATCAAGGGGCTGAGAAAGAATGGGGGGA
TGGTATCCGTGGGCTGTCGCTCAGTGCAGCCCGCTTCGCTTTGCTCCGTCTAGAGGAAGGACCTCCTCAC
ACTAAAAACTGGAGGCCTCAGCTGCTCGTCCTACTGAAGCTGGATGAAGATTTACACGTCAAGCACCCTC
GCCTCCTCACCTTTGCCTCCCAGCTCAAGGCAGGAAAGGGACTCACGATTGTGGGCTCTGTCATCGTGGG
GAACTTCTTGGAGAACTATGGTGACGCGCTCGCGGCAGAGCAGACCATTAAGCACCTAATGGAGGCAGAA
AAGGTAAAAGGATTCTGCCAATTGGTGGTGGCTGCCAAGCTGAAAGAGGGCATTTCACACCTCATCCAGT
CCTGTGGCCTCGGAGGCATGAAACACAACACAGTGGTGATGGGCTGGCCCAATGGCTGGCGTCAGAGTGA
AGATGCTCGCGCTTGGAAGACTTTCATTGGCACAGTACGAGTGACAACTGCTGCCCATCTAGCCCTGCTG
GTGGCTAAAAATGTCTCCTTCTTTCCCAGCAATGTGGAGCAGTTTTCTGAGGGCAACATTGATGTGTGGT
GGATTGTGCATGATGGGGGCATGCTCATGCTATTACCGTTCCTGCTGAAACAGCACAAGGTTTGGCGGAA
ATGCAGCATACGGATCTTCACAGTAGCCCAACTAGAAGACAACAGTATCCAGATGAAGAAGGATCTGGCC
ACCTTTCTGTACCACCTGCGCATTGAGGCAGAAGTGGAAGTGGTGGAGATGCACGACAGTGACATATCTG
CCTATACATATGAGCGCACCCTGATGATGGAGCAGAGGTCCCAGATGCTTCGGCATATGCGGCTGTCCAA
AACAGAGCGAGACAGGGAGGCACAGCTGGTGAAAGATCGAAACTCAATGCTACGCTTGACCAGCATTGGC
TCTGATGAGGACGAAGAGACAGAAACGTACCAGGAGAAGGTGCACATGACTTGGACCAAGGATAAATACA
TGGCATCCCGGGGGCAAAAGGTCAAGTCAATGGAAGGATTCCAGGACCTACTTAATATGCGTCCGGACCA
GTCCAACGTGAGACGGATGCATACAGCAGTGAAGCTCAATGAAGTTATAGTCAACAAGTCTCATGAAGCA
AAGCTGGTTTTGTTGAATATGCCAGGACCACCCCGGAACCCTGAAGGTGATGAAAACTACATGGAATTTC
TAGAAGTGCTCACTGAGGGATTAGAACGAGTCCTTCTTGTCCGGGGTGGTGGCAGTGAGGTCATCACCAT
TTACTCATAA

Translation (1099 aa):
MPHFTVTKVEDPEEGAAGPLSPEPSSAEVKARIQDPQEPDPSQNSITGEHSQLLDDGHKKARNAYLNNSN
YEEGDEYFDKNLALFEEEMDTRPKVSSLLNRMANYTNLTQGAKEHEEAENITEGKKKPTKSPQMGTFMGV
YLPCLQNIFGVILFLRLTWVVGTAGILQAFAIVLICCCCTMLTAISMSAIATNGVVPAGGSYFMISRALG
PEFGGAVGLCFYLGTTFAAAMYILGAIEIFLVYIVPRAAIFRSDDALKESAAMLNNMRVYGTAFLVLMVL
VVFIGVRYVNKFASLFLACVIVSILAIYAGAIKSSFAPPHFPVCMLGNRTLSSRHLDICSKTKEVDNMTV
PSKLWGFFCNSSQFFNATCDEYFVHNNVISIQGIPGLASGIITENLWSNYLPKGEIIEKPSAKSSDVLGN
LNHEYVLADITTSFTLLVGIFFPSVTGIMAGSNRSGDLKDAQKSIPIGTILAILTTSFVYLSNVVLFGAC
IEGVVLRDKFGDAVKGNLVVGTLSWPSPWVIVIGSFFSTCGAGLQSLTGAPRLLQAIAKDNIIPFLRVFG
HSKANGEPTWALLLTAAIAELGILIASLDLVAPILSMFFLMCYLFVNLACALQTLLRTPNWRPRFRYYHW
ALSFMGMSICLALMFISSWYYAIVAMVIAGMIYKYIEYQGAEKEWGDGIRGLSLSAARFALLRLEEGPPH
TKNWRPQLLVLLKLDEDLHVKHPRLLTFASQLKAGKGLTIVGSVIVGNFLENYGDALAAEQTIKHLMEAE
KVKGFCQLVVAAKLKEGISHLIQSCGLGGMKHNTVVMGWPNGWRQSEDARAWKTFIGTVRVTTAAHLALL
VAKNVSFFPSNVEQFSEGNIDVWWIVHDGGMLMLLPFLLKQHKVWRKCSIRIFTVAQLEDNSIQMKKDLA
TFLYHLRIEAEVEVVEMHDSDISAYTYERTLMMEQRSQMLRHMRLSKTERDREAQLVKDRNSMLRLTSIG
SDEDEETETYQEKVHMTWTKDKYMASRGQKVKSMEGFQDLLNMRPDQSNVRRMHTAVKLNEVIVNKSHEA
KLVLLNMPGPPRNPEGDENYMEFLEVLTEGLERVLLVRGGGSEVITIYS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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