NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16665.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16665.1 Public Mus musculus 2 Gatm 23 108 98 CCDS HistoryNCBI Gene:67092Re-query CCDS DB by CCDS ID:16665.1Re-query CCDS DB by GeneID:67092See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16665.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028624.8 ENSMUSP00000028624.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028624.8Link to Ensembl Protein Viewer:ENSMUSP00000028624.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000028624Re-query CCDS DB by Protein ID:ENSMUSP00000028624
Original member Current member NCBI NM_025961.5 NP_080237.1 Accepted alive Link to Nucleotide Sequence:NM_025961.5Link to Protein Sequence:NP_080237.1Re-query CCDS DB by Nucleotide ID:NM_025961Re-query CCDS DB by Protein ID:NP_080237Link to BLAST:NP_080237.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080237.1 423 Q9D964 423 100% 0 0

Chromosomal Locations for CCDS 16665.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 122595497 122595609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122597372 122597488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122598137 122598200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122600379 122600543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122600692 122600829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122602505 122602695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122603582 122603777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122609669 122609887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122611148 122611216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1272 nt):
ATGCTACGGGTGCGGTGTCTGCGCGGAGGCAGCCGAGGTGCCGAGGCGGTGCACTACATCGGCTCTCGGC
TTGGAGGATCCTTAACAGGATGGGTGCAGCGAACTTTCCAGAGCACCCAGGCAGCTACAGCTTCCTCCCG
AAATTCCTGTGCAGCTGAAGACAAGGCCACCCATCCTCTGCCCAAGGACTGCCCTGTCTCCTCTTACAAC
GAATGGGACCCTTTAGAGGAAGTGATAGTGGGCAGAGCTGAAAATGCCTGTGTGCCACCATTCACAGTGG
AGGTGAAGGCCAATACATATGAAAAGTACTGGCCATTTTACCAAAAAAATGGAGGTCTTTATTTTCCCAA
AGATCATCTGAAGAAGGCTGTTGCTGAGGTCGAAGAGATGTGCAATATTTTATCAATGGAAGGAGTGACC
GTGAGGCGGCCTGACCCCATCGACTGGTCACTCAAGTATAAGACTCCTGATTTTGAGTCTACAGGTTTGT
ACAGCGCAATGCCTCGAGACATCCTGATGGTTGTGGGAAACGAGATTATAGAAGCACCCATGGCATGGCG
CTCACGCTTCTTTGAGTACCGAGCGTACAGGTCAATTATCAAAGACTACTTCCATCGTGGTGCCAAGTGG
ACAACAGCACCCAAGCCCACAATGGCTGACGAACTGTATGACCAGAATTATCCCATCCATTCCGTGGAAG
ACAGACACAAATTGGCCGCTCAGGGAAAGTTCGTGACGACTGAGTTTGAGCCTTGCTTTGATGCTGCTGA
CTTCATTCGAGCTGGAAGAGATATTTTTGCACAGAGAAGCCAGGTTACAAACTACCTGGGCATCGAGTGG
ATGCGTAGGCATCTTGCTCCAGACTACAGAGTACATATCATCTCTTTTAAAGACCCCAATCCAATGCACA
TCGATGCCACCTTCAACATCATTGGACCTGGTCTTGTGCTCTCCAACCCCGACCGTCCCTGTCATCAGAT
TGATCTTTTCAAGAAAGCAGGATGGACCATAGTTACTCCTCCAACACCAGTCATCCCCGATGATCATCCC
CTCTGGATGTCATCCAAATGGCTTTCCATGAACGTCTTAATGCTAGATGAGAAGCGCGTGATGGTAGATG
CCAATGAAGTTCCAATTCAAAAGATGTTTGAGAAGCTGGGTATCAGTACCATTAAGGTTAACATTCGAAA
TGCCAATTCCCTGGGAGGAGGCTTCCACTGCTGGACCTGCGACGTCCGGCGCCGAGGCACCCTTCAGTCC
TACTTTGACTGA

Translation (423 aa):
MLRVRCLRGGSRGAEAVHYIGSRLGGSLTGWVQRTFQSTQAATASSRNSCAAEDKATHPLPKDCPVSSYN
EWDPLEEVIVGRAENACVPPFTVEVKANTYEKYWPFYQKNGGLYFPKDHLKKAVAEVEEMCNILSMEGVT
VRRPDPIDWSLKYKTPDFESTGLYSAMPRDILMVVGNEIIEAPMAWRSRFFEYRAYRSIIKDYFHRGAKW
TTAPKPTMADELYDQNYPIHSVEDRHKLAAQGKFVTTEFEPCFDAADFIRAGRDIFAQRSQVTNYLGIEW
MRRHLAPDYRVHIISFKDPNPMHIDATFNIIGPGLVLSNPDRPCHQIDLFKKAGWTIVTPPTPVIPDDHP
LWMSSKWLSMNVLMLDEKRVMVDANEVPIQKMFEKLGISTIKVNIRNANSLGGGFHCWTCDVRRRGTLQS
YFD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH