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Report for CCDS16722.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16722.1 Public Mus musculus 2 Slc20a1 23 108 98 CCDS HistoryNCBI Gene:20515Re-query CCDS DB by CCDS ID:16722.1Re-query CCDS DB by GeneID:20515See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16722.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028880.9 ENSMUSP00000028880.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028880.9Link to Ensembl Protein Viewer:ENSMUSP00000028880.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000028880Re-query CCDS DB by Protein ID:ENSMUSP00000028880
Original member Current member EBI ENSMUST00000110315.1 ENSMUSP00000105944.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110315.1Link to Ensembl Protein Viewer:ENSMUSP00000105944.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110315Re-query CCDS DB by Protein ID:ENSMUSP00000105944
Original member NCBI NM_015747.2 NP_056562.1 Updated not alive Link to Nucleotide Sequence:NM_015747.2Link to Protein Sequence:NP_056562.1Re-query CCDS DB by Nucleotide ID:NM_015747Re-query CCDS DB by Protein ID:NP_056562
Current member NCBI NM_015747.3 NP_056562.1 Accepted alive Link to Nucleotide Sequence:NM_015747.3Link to Protein Sequence:NP_056562.1Re-query CCDS DB by Nucleotide ID:NM_015747Re-query CCDS DB by Protein ID:NP_056562Link to BLAST:NP_056562.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056562.1 681 Q61609 681 100% 0 0

Chromosomal Locations for CCDS 16722.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 129199719 129200064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129200183 129200323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129200500 129200585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129204059 129204155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129206367 129206486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129207610 129207876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129207981 129208539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129209041 129209223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129209872 129209956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129210684 129210845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2046 nt):
ATGGAATCTACTGTGGCAACGATTACTAGTACCCTAGCTGCTGTTACTGCTTCCGCTCCACCGAAGTATG
ACAATCTATGGATGCTCATCCTGGGCTTCATCATTGCATTTGTCTTGGCATTCTCCGTGGGAGCCAATGA
TGTAGCAAATTCGTTCGGTACAGCTGTAGGCTCAGGTGTAGTGACCCTGAAGCAAGCCTGCATCTTAGCT
AGCATCTTCGAAACTGTGGGCTCCGCCTTGCTGGGGGCCAAAGTGAGCGAAACCATCCGGAACGGCTTGA
TAGATGTGGAGCTGTACAACGAAACTCAAGATCTGCTCATGGCTGGCTCCGTCAGTGCTATGTTTGGTTC
TGCTGTGTGGCAGCTCGTGGCTTCGTTTTTGAAGCTTCCGATTTCTGGGACCCATTGTATTGTCGGTGCA
ACCATTGGTTTCTCCCTTGTGGCAAATGGGCAGAAGGGTGTCAAGTGGTCTGAACTGATAAAAATTGTGA
TGTCGTGGTTCGTCTCTCCGCTGCTTTCTGGTATTATGTCTGGAATTTTATTCTTCCTTGTTCGTGCGTT
CATCCTCCGTAAGGCAGATCCGGTTCCTAATGGCTTACGAGCTTTACCAATTTTTTATGCCTGCACAATC
GGAATCAACCTCTTTTCCATTATGTATACTGGAGCACCGTTGCTGGGCTTTGACAAACTTCCTCTGTGGG
GTACCATCCTCATCTCGGTGGGATGTGCAGTTTTCTGTGCCCTTATCGTCTGGTTCTTTGTATGTCCCAG
GATGAAGAGAAAAATTGAACGAGAAGTAAAGTCTAGTCCGTCTGAAAGTCCCTTAATGGAAAAGAAGAGC
AACTTAAAAGAAGACCATGAAGAAACAAAGATGGCTCCTGGAGACGTTGAGCATAGGAATCCTGTGTCTG
AGGTAGTGTGTGCCACTGGGCCACTCCGGGCTGTGGTGGAGGAGAGGACGGTGTCATTCAAACTTGGTGA
CCTGGAGGAGGCTCCGGAGCGAGAGCGGCTTCCCATGGACCTGAAGGAGGAGACCAGCATAGACAGCACC
ATCAATGGTGCAGTGCAGTTGCCTAATGGGAACCTTGTTCAGTTCAGTCAAACTGTCAGCAACCAGATCA
ACTCCAGTGGCCACTATCAGTATCACACCGTGCACAAGGATTCTGGCTTGTACAAGGAGCTGCTCCATAA
GTTACATCTGGCCAAGGTGGGAGACTGCATGGGAGATTCTGGGGACAAGCCCTTGAGACGCAACAACAGC
TACACTTCCTACACTATGGCAATATGTGGCATGCCCCTGGATTCATTCCGTGCCAAAGAAGGTGAACAAA
AGGGAGATGAAATGGAGACGCTGACATGGCCTAATGCAGATACCAAGAAGCGGATTCGAATGGACAGTTA
CACCAGTTACTGCAATGCCGTGTCTGACCTTCACTCCGAGTCTGAGATGGACATGAGTGTGAAGGCTGAG
ATGGGCCTGGGTGACAGAAAAGGAAGCAGTGGCTCTCTTGAAGAATGGTATGACCAGGATAAGCCTGAAG
TGTCCCTTCTCTTCCAGTTCCTGCAGATCCTTACAGCCTGCTTTGGGTCATTTGCCCATGGTGGCAATGA
CGTCAGCAATGCCATCGGCCCTCTGGTTGCTTTGTATCTTGTTTATAAACAAGAAGCCTCTACAAAAGCG
GCAACACCCATATGGCTTCTGCTTTATGGTGGTGTTGGCATTTGCATGGGCCTGTGGGTTTGGGGAAGAA
GAGTTATCCAGACCATGGGGAAGGACCTGACCCCAATCACACCCTCCAGTGGTTTCAGTATTGAACTGGC
GTCTGCCTTAACTGTGGTCATCGCATCAAACATTGGCCTTCCCATCAGCACAACACATTGCAAAGTGGGC
TCTGTTGTGTCTGTTGGCTGGCTCCGATCAAAGAAGGCTGTTGACTGGCGACTGTTTCGAAACATTTTTA
TGGCCTGGTTTGTCACGGTCCCCATCTCTGGGGTTATCAGTGCCGCTATCATGGCAGTATTCAAGTACAT
CATCCTGCCAGTGTGA

Translation (681 aa):
MESTVATITSTLAAVTASAPPKYDNLWMLILGFIIAFVLAFSVGANDVANSFGTAVGSGVVTLKQACILA
SIFETVGSALLGAKVSETIRNGLIDVELYNETQDLLMAGSVSAMFGSAVWQLVASFLKLPISGTHCIVGA
TIGFSLVANGQKGVKWSELIKIVMSWFVSPLLSGIMSGILFFLVRAFILRKADPVPNGLRALPIFYACTI
GINLFSIMYTGAPLLGFDKLPLWGTILISVGCAVFCALIVWFFVCPRMKRKIEREVKSSPSESPLMEKKS
NLKEDHEETKMAPGDVEHRNPVSEVVCATGPLRAVVEERTVSFKLGDLEEAPERERLPMDLKEETSIDST
INGAVQLPNGNLVQFSQTVSNQINSSGHYQYHTVHKDSGLYKELLHKLHLAKVGDCMGDSGDKPLRRNNS
YTSYTMAICGMPLDSFRAKEGEQKGDEMETLTWPNADTKKRIRMDSYTSYCNAVSDLHSESEMDMSVKAE
MGLGDRKGSSGSLEEWYDQDKPEVSLLFQFLQILTACFGSFAHGGNDVSNAIGPLVALYLVYKQEASTKA
ATPIWLLLYGGVGICMGLWVWGRRVIQTMGKDLTPITPSSGFSIELASALTVVIASNIGLPISTTHCKVG
SVVSVGWLRSKKAVDWRLFRNIFMAWFVTVPISGVISAAIMAVFKYIILPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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