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Report for CCDS16761.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16761.1 Reviewed, update pending Mus musculus 2 Pank2 23 108 98 CCDS HistoryNCBI Gene:74450Re-query CCDS DB by CCDS ID:16761.1Re-query CCDS DB by GeneID:74450See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 16761.1
The coding region has been updated to extend the N-terminus to an upstream non-AUG initiation codon that is supported by available conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Non-AUG initiation codon

Sequence IDs included in CCDS 16761.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000150843.7 ENSMUSP00000119606.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000150843.7Link to Ensembl Protein Viewer:ENSMUSP00000119606.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000150843Re-query CCDS DB by Protein ID:ENSMUSP00000119606
Original member NCBI NM_153501.2 NP_705721.2 Updated not alive Link to Nucleotide Sequence:NM_153501.2Link to Protein Sequence:NP_705721.2Re-query CCDS DB by Nucleotide ID:NM_153501Re-query CCDS DB by Protein ID:NP_705721
Current member NCBI NM_153501.3 NP_705721.3 Pending alive Link to Nucleotide Sequence:NM_153501.3Link to Protein Sequence:NP_705721.3Re-query CCDS DB by Nucleotide ID:NM_153501Re-query CCDS DB by Protein ID:NP_705721Link to BLAST:NP_705721.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_705721.3 456 Q7M753 456 100% 0 0

Chromosomal Locations for CCDS 16761.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 131262569 131262815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131273911 131274263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131280157 131280410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131282592 131282768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131287474 131287597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131293399 131293524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131296273 131296323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1332 nt):
ATGGGAGCGGGCCGGTTTGGCGCGCCTATGGAGCGCCAGGGCAGGGCTGCCGCCACCTCAGCCGCGGTCG
GCGAGTCTGCGGACTCGGAAGCGCGGAGGCGGGACCCGCTGAGGCGCCGGGCGAGTAGCGCGGCGCCGTC
GGGGTCCGGGGAGGCGGAGAGTGTGAGACGGGAGCGGCCCGGCTCTCTAGGCGGCTCCACCTCGGCCGGC
CGCCCGCGCGCCGAAGGCCTCCGGAAGAGGCGGCCGCTTTTTCCATGGTTTGGCTTGGATATTGGAGGAA
CCTTGGTCAAGCTGGTTTATTTTGAACCTAAAGACATCACTGCTGAAGAAGAAAAGGAGGAAGTGGAGAG
TCTGAAAAGCATCCGGAAGTACCTGACCTCCAATGTGGCTTACGGATCCACAGGCATTCGGGACGTGCAC
CTTGAGCTGAAGGACCTGACTCTGTGTGGACGCAAAGGCAATCTGCACTTTATACGCTTTCCCACCCATG
ACATGCCTGCTTTTATTCAGATGGGCAGAGATAAAAACTTCTCAAGTCTCCACACTGTCTTTTGTGCCAC
TGGAGGTGGATCATACAAATTTGAGCAGGATTTTCTCACAATAGGTGACCTTCAGCTTCGAAAACTGGAT
GAACTAGATTGCTTAATAAAAGGAATTTTATACATTGACTCAGTTGGATTCAATGGACGGTCACAGTGCT
ATTATTTTGAAAACCCTGCTGATTCTGAAAAATGTCAGAAGTTACCATTTGATTTAAAAAATCCATATCC
TCTGCTTCTGGTGAACATCGGCTCAGGGGTTAGCATCTTAGCAGTGTATTCCAAAGATAATTATAAGAGG
GTCACAGGCACCAGTCTTGGAGGAGGAACTTTCTTTGGTCTCTGCTGTCTTCTTACTGGCTGTAGTACTT
TTGAAGAAGCTCTTGAGATGGCATCTCGTGGAGATAGCACCAAAGTGGACAAATTAGTTCGAGACATTTA
TGGAGGAGACTATGAGAGGTTTGGCTTGCCAGGCTGGGCTGTGGCTTCAAGTTTTGGAAACATGATGAGC
AAGGAGAAGAGAGAGGCGGCCAGTAAGGAGGATCTTGCCAGAGCAACTTTGATCACCATCACCAACAACA
TTGGCTCCATAGCAAGAATGTGTGCCCTTAATGAAAACATTAACCAGGTCGTATTTGTCGGCAATTTCCT
GAGAGTCAACACGATTGCTATGCGGCTTCTGGCGTATGCGCTGGATTACTGGTCCAAGGGGCAGCTGAAA
GCACTGTTTTCCGAGCACGAGGGATATTTTGGAGCCGTTGGAGCACTCCTCGAGCTGTTGAAGATACCCT
GA

Translation (443 aa):
MGAGRFGAPMERQGRAAATSAAVGESADSEARRRDPLRRRASSAAPSGSGEAESVRRERPGSLGGSTSAG
RPRAEGLRKRRPLFPWFGLDIGGTLVKLVYFEPKDITAEEEKEEVESLKSIRKYLTSNVAYGSTGIRDVH
LELKDLTLCGRKGNLHFIRFPTHDMPAFIQMGRDKNFSSLHTVFCATGGGSYKFEQDFLTIGDLQLRKLD
ELDCLIKGILYIDSVGFNGRSQCYYFENPADSEKCQKLPFDLKNPYPLLLVNIGSGVSILAVYSKDNYKR
VTGTSLGGGTFFGLCCLLTGCSTFEEALEMASRGDSTKVDKLVRDIYGGDYERFGLPGWAVASSFGNMMS
KEKREAASKEDLARATLITITNNIGSIARMCALNENINQVVFVGNFLRVNTIAMRLLAYALDYWSKGQLK
ALFSEHEGYFGAVGALLELLKIP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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