CCDS Home FTP Process Releases & Statistics
Collaborators EBI HGNC MGI NCBI
Contact Us email CCDS
Genome Displays Related Resources Gene HomoloGene MANE RefSeq
|
|
Report for CCDS16761.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
16761.1 |
Reviewed, update pending |
Mus musculus |
2 |
Pank2 |
23 |
108 |
98 |
|
Public Note for CCDS 16761.1 |
The coding region has been updated to extend the N-terminus to an upstream non-AUG initiation codon that is supported by available conservation data. |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)
Attributes |
Non-AUG initiation codon |
Sequence IDs included in CCDS 16761.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
|
|
EBI |
ENSMUST00000150843.7 |
ENSMUSP00000119606.1 |
Accepted |
alive |
|
|
|
NCBI |
NM_153501.2 |
NP_705721.2 |
Updated |
not alive |
|
|
|
NCBI |
NM_153501.3 |
NP_705721.3 |
Pending |
alive |
|
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_705721.3 |
456 |
Q7M753 |
456 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 16761.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1332 nt): ATGGGAGCGGGCCGGTTTGGCGCGCCTATGGAGCGCCAGGGCAGGGCTGCCGCCACCTCAGCCGCGGTCG GCGAGTCTGCGGACTCGGAAGCGCGGAGGCGGGACCCGCTGAGGCGCCGGGCGAGTAGCGCGGCGCCGTC GGGGTCCGGGGAGGCGGAGAGTGTGAGACGGGAGCGGCCCGGCTCTCTAGGCGGCTCCACCTCGGCCGGC CGCCCGCGCGCCGAAGGCCTCCGGAAGAGGCGGCCGCTTTTTCCATGGTTTGGCTTGGATATTGGAGGAA CCTTGGTCAAGCTGGTTTATTTTGAACCTAAAGACATCACTGCTGAAGAAGAAAAGGAGGAAGTGGAGAG TCTGAAAAGCATCCGGAAGTACCTGACCTCCAATGTGGCTTACGGATCCACAGGCATTCGGGACGTGCAC CTTGAGCTGAAGGACCTGACTCTGTGTGGACGCAAAGGCAATCTGCACTTTATACGCTTTCCCACCCATG ACATGCCTGCTTTTATTCAGATGGGCAGAGATAAAAACTTCTCAAGTCTCCACACTGTCTTTTGTGCCAC TGGAGGTGGATCATACAAATTTGAGCAGGATTTTCTCACAATAGGTGACCTTCAGCTTCGAAAACTGGAT GAACTAGATTGCTTAATAAAAGGAATTTTATACATTGACTCAGTTGGATTCAATGGACGGTCACAGTGCT ATTATTTTGAAAACCCTGCTGATTCTGAAAAATGTCAGAAGTTACCATTTGATTTAAAAAATCCATATCC TCTGCTTCTGGTGAACATCGGCTCAGGGGTTAGCATCTTAGCAGTGTATTCCAAAGATAATTATAAGAGG GTCACAGGCACCAGTCTTGGAGGAGGAACTTTCTTTGGTCTCTGCTGTCTTCTTACTGGCTGTAGTACTT TTGAAGAAGCTCTTGAGATGGCATCTCGTGGAGATAGCACCAAAGTGGACAAATTAGTTCGAGACATTTA TGGAGGAGACTATGAGAGGTTTGGCTTGCCAGGCTGGGCTGTGGCTTCAAGTTTTGGAAACATGATGAGC AAGGAGAAGAGAGAGGCGGCCAGTAAGGAGGATCTTGCCAGAGCAACTTTGATCACCATCACCAACAACA TTGGCTCCATAGCAAGAATGTGTGCCCTTAATGAAAACATTAACCAGGTCGTATTTGTCGGCAATTTCCT GAGAGTCAACACGATTGCTATGCGGCTTCTGGCGTATGCGCTGGATTACTGGTCCAAGGGGCAGCTGAAA GCACTGTTTTCCGAGCACGAGGGATATTTTGGAGCCGTTGGAGCACTCCTCGAGCTGTTGAAGATACCCT GA
Translation (443 aa): MGAGRFGAPMERQGRAAATSAAVGESADSEARRRDPLRRRASSAAPSGSGEAESVRRERPGSLGGSTSAG RPRAEGLRKRRPLFPWFGLDIGGTLVKLVYFEPKDITAEEEKEEVESLKSIRKYLTSNVAYGSTGIRDVH LELKDLTLCGRKGNLHFIRFPTHDMPAFIQMGRDKNFSSLHTVFCATGGGSYKFEQDFLTIGDLQLRKLD ELDCLIKGILYIDSVGFNGRSQCYYFENPADSEKCQKLPFDLKNPYPLLLVNIGSGVSILAVYSKDNYKR VTGTSLGGGTFFGLCCLLTGCSTFEEALEMASRGDSTKVDKLVRDIYGGDYERFGLPGWAVASSFGNMMS KEKREAASKEDLARATLITITNNIGSIARMCALNENINQVVFVGNFLRVNTIAMRLLAYALDYWSKGQLK ALFSEHEGYFGAVGALLELLKIP
|