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Report for CCDS16772.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16772.1 Public Mus musculus 2 Cds2 23 108 98 CCDS HistoryNCBI Gene:110911Re-query CCDS DB by CCDS ID:16772.1Re-query CCDS DB by GeneID:110911See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16772.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103181.10 ENSMUSP00000099470.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103181.10Link to Ensembl Protein Viewer:ENSMUSP00000099470.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000103181Re-query CCDS DB by Protein ID:ENSMUSP00000099470
Original member Current member NCBI NM_138651.7 NP_619592.1 Accepted alive Link to Nucleotide Sequence:NM_138651.7Link to Protein Sequence:NP_619592.1Re-query CCDS DB by Nucleotide ID:NM_138651Re-query CCDS DB by Protein ID:NP_619592Link to BLAST:NP_619592.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_619592.1 444 Q99L43 444 100% 0 0

Chromosomal Locations for CCDS 16772.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 132263444 132263497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132293245 132293381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132294384 132294480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132295531 132295628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132297225 132297364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132297634 132297692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132298469 132298551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132300554 132300641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132301232 132301300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132302080 132302232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132304359 132304478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132304853 132304956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132305153 132305285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1335 nt):
ATGACCGAACTACGGCAGAGGGTTGTCCGCGAGGACGCACCTCCGGAGGACAAGGAATCAGAGTCCGAAG
CAAAGCTAGATGGAGAGACAGCGTCTGACAGCGAGAGCCGAGCGGAAACAGCTCCCCTACCAACCTCCGT
AGATGACACCCCAGAGGTCCTTAACAGGGCCCTTTCCAACCTGTCCTCAAGGTGGAAGAACTGGTGGGTG
AGAGGCATCCTGACTTTGGCCATGATCGCGTTTTTCTTCATTATCATTTACCTGGGACCAATGGTTTTGA
TGATGATTGTTATGTGTGTCCAGATTAAGTGTTTCCATGAAATAATCACTATTGGCTACAATGTATACCA
CTCCTACGACCTGCCCTGGTTCAGGACCCTCAGCTGGTACTTCCTGCTGTGTGTGAACTACTTCTTCTAT
GGGGAGACAGTGACGGACTACTTCTTCACTCTGGTCCAGAGAGAGGAGCCTTTGCGGATCCTCAGTAAAT
ACCACCGGTTCATCTCCTTTGCCCTGTATCTGACAGGATTCTGCATGTTTGTACTGAGTCTAGTTAAGAA
GCATTATCGGCTGCAGTTCTACATGTTTGGCTGGACCCATGTGACCTTGCTTATTGTCGTAACGCAGTCA
CACCTTGTTATCCATAACTTGTTTGAAGGAATGATATGGTTTATTGTTCCCATCTCGTGCGTCATCTGCA
ATGACATTATGGCCTATATGTTTGGCTTTTTCTTTGGTCGGACCCCACTCATTAAGCTCTCTCCAAAGAA
GACCTGGGAAGGCTTCATTGGGGGCTTCTTTGCCACTGTGGTGTTTGGCCTTTTGCTCTCCTATGTGATG
TCTGGGTACAGATGCTTCGTGTGTCCCGTGGAATACAACAATGACACCAACAGCTTCACTGTGGACTGTG
AGCCGTCTGACCTATTCCGCCTGCAGGAGTACAACATCCCTGGGGTGATCCAGTCGGCCATTGGCTGGAA
AACGGTGAGGATGTACCCTTTCCAGATCCACAGCATCGCCCTCTCCACCTTCGCCTCGCTCATCGGCCCT
TTCGGAGGGTTCTTCGCCAGTGGATTCAAACGGGCCTTTAAAATCAAAGATTTTGCCAATACCATTCCCG
GTCATGGAGGCATCATGGATCGCTTTGACTGCCAGTACCTGATGGCCACCTTTGTCAATGTGTACATCGC
CAGCTTTATCAGGGGTCCAAACCCAAGCAAACTGATCCAGCAGTTTCTGACGTTGCGGCCAGATCAGCAG
CTTCACATCTTCAACACGCTCAAGTCTCACCTAACTGACAAGGGGATTCTGACATCTGCCTTGGAAGATG
AGTAG

Translation (444 aa):
MTELRQRVVREDAPPEDKESESEAKLDGETASDSESRAETAPLPTSVDDTPEVLNRALSNLSSRWKNWWV
RGILTLAMIAFFFIIIYLGPMVLMMIVMCVQIKCFHEIITIGYNVYHSYDLPWFRTLSWYFLLCVNYFFY
GETVTDYFFTLVQREEPLRILSKYHRFISFALYLTGFCMFVLSLVKKHYRLQFYMFGWTHVTLLIVVTQS
HLVIHNLFEGMIWFIVPISCVICNDIMAYMFGFFFGRTPLIKLSPKKTWEGFIGGFFATVVFGLLLSYVM
SGYRCFVCPVEYNNDTNSFTVDCEPSDLFRLQEYNIPGVIQSAIGWKTVRMYPFQIHSIALSTFASLIGP
FGGFFASGFKRAFKIKDFANTIPGHGGIMDRFDCQYLMATFVNVYIASFIRGPNPSKLIQQFLTLRPDQQ
LHIFNTLKSHLTDKGILTSALEDE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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