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Report for CCDS16942.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16942.1 Public Mus musculus 2 Ahcy 23 108 98 CCDS HistoryNCBI Gene:269378Re-query CCDS DB by CCDS ID:16942.1Re-query CCDS DB by GeneID:269378See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16942.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054607.15 ENSMUSP00000061851.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054607.15Link to Ensembl Protein Viewer:ENSMUSP00000061851.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000054607Re-query CCDS DB by Protein ID:ENSMUSP00000061851
Original member Current member NCBI NM_016661.3 NP_057870.3 Accepted alive Link to Nucleotide Sequence:NM_016661.3Link to Protein Sequence:NP_057870.3Re-query CCDS DB by Nucleotide ID:NM_016661Re-query CCDS DB by Protein ID:NP_057870Link to BLAST:NP_057870.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057870.3 432 P50247 432 100% 0 0

Chromosomal Locations for CCDS 16942.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 155060449 155060580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155062149 155062343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155063780 155063897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155063989 155064076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155064154 155064361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155064814 155064926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155065537 155065686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155067323 155067398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155068828 155069018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155074365 155074392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1299 nt):
ATGTCTGATAAACTGCCCTACAAAGTCGCGGACATCGGACTGGCCGCCTGGGGACGGAAGGCTCTGGATA
TAGCTGAGAATGAGATGCCAGGATTGATGCGCATGCGGGAGATGTACTCAGCCTCCAAGCCACTGAAGGG
TGCTCGCATTGCTGGCTGCCTGCACATGACCGTGGAGACTGCTGTTCTCATTGAGACTCTCGTGGCCCTG
GGTGCTGAGGTGCGGTGGTCCAGCTGCAACATCTTCTCTACTCAGGACCATGCAGCGGCTGCCATTGCCA
AGGCTGGCATTCCAGTGTTTGCCTGGAAGGGCGAGACAGATGAGGAGTACCTGTGGTGCATTGAGCAGAC
GCTGCACTTCAAGGACGGACCCCTCAACATGATTCTGGATGATGGTGGTGACCTTACTAACCTCATCCAC
ACCAAATACCCACAGCTTCTGTCAGGCATCCGAGGTATCTCTGAGGAGACCACGACTGGGGTCCACAACC
TCTACAAGATGATGTCCAATGGGATACTGAAGGTGCCTGCCATCAATGTCAACGATTCTGTCACCAAGAG
CAAGTTTGACAACCTCTATGGCTGCCGGGAGTCCCTCATAGATGGCATCAAACGGGCCACAGATGTGATG
ATTGCGGGCAAGGTGGCGGTGGTGGCAGGCTATGGTGATGTGGGCAAGGGCTGTGCCCAGGCCCTGAGGG
GTTTTGGGGCCCGAGTCATCATCACCGAGATCGACCCCATCAATGCACTGCAAGCTGCCATGGAGGGCTA
TGAGGTAACCACTATGGACGAAGCCTGTAAGGAGGGCAACATCTTTGTCACCACCACAGGCTGTGTGGAT
ATCATCCTTGGCCGGCACTTTGAGCAGATGAAGGATGACGCCATTGTCTGTAACATTGGACACTTCGATG
TGGAGATTGATGTGAAGTGGCTCAATGAGAACGCGGTGGAGAAAGTGAACATCAAGCCCCAGGTGGACCG
CTACTGGCTAAAGAATGGGCGCCGCATCATCTTGCTGGCTGAAGGCCGTCTGGTCAACCTGGGTTGTGCC
ATGGGACACCCCAGCTTCGTGATGAGCAACTCCTTCACAAACCAGGTGATGGCACAGATTGAGCTGTGGA
CCCACCCAGATAAATACCCTGTTGGGGTTCACTTCCTGCCTAAGAAGCTGGATGAGGCGGTGGCTGAAGC
CCACCTGGGCAAGCTGAATGTGAAGCTGACCAAGCTGACTGAGAAGCAGGCCCAGTACCTGGGCATGCCC
ATCAACGGCCCCTTCAAGCCTGATCACTACCGCTACTGA

Translation (432 aa):
MSDKLPYKVADIGLAAWGRKALDIAENEMPGLMRMREMYSASKPLKGARIAGCLHMTVETAVLIETLVAL
GAEVRWSSCNIFSTQDHAAAAIAKAGIPVFAWKGETDEEYLWCIEQTLHFKDGPLNMILDDGGDLTNLIH
TKYPQLLSGIRGISEETTTGVHNLYKMMSNGILKVPAINVNDSVTKSKFDNLYGCRESLIDGIKRATDVM
IAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACKEGNIFVTTTGCVD
IILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYWLKNGRRIILLAEGRLVNLGCA
MGHPSFVMSNSFTNQVMAQIELWTHPDKYPVGVHFLPKKLDEAVAEAHLGKLNVKLTKLTEKQAQYLGMP
INGPFKPDHYRY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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