NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16975.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16975.1 Public Mus musculus 2 Rpn2 23 108 98 CCDS HistoryNCBI Gene:20014Re-query CCDS DB by CCDS ID:16975.1Re-query CCDS DB by GeneID:20014See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16975.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000116380.8 ENSMUSP00000112081.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000116380.8Link to Ensembl Protein Viewer:ENSMUSP00000112081.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000116380Re-query CCDS DB by Protein ID:ENSMUSP00000112081
Original member Current member NCBI NM_019642.4 NP_062616.2 Accepted alive Link to Nucleotide Sequence:NM_019642.4Link to Protein Sequence:NP_062616.2Re-query CCDS DB by Nucleotide ID:NM_019642Re-query CCDS DB by Protein ID:NP_062616Link to BLAST:NP_062616.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062616.2 631 Q9DBG6 631 100% 0 0

Chromosomal Locations for CCDS 16975.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 157279323 157279335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157283584 157283777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157289528 157289623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157290537 157290712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157294153 157294228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157295254 157295388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157297382 157297558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157299541 157299659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157302406 157302511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157310201 157310292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157312477 157312591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157314778 157314972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157316123 157316209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157317947 157318042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157320121 157320196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157321743 157321872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157325711 157325723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1896 nt):
ATGGCGCCGCCGGGTTCAAGCGCTGTCTTCCTGTTGGCCCTGACAATCACTGCCAGCGTCCAGGCTCTGA
CCCCCACCCACTACCTCACCAAGCAGGATGTGGAAAGGCTGAAGGCCTCACTGGACCGCCCCTTCACAGA
TTTGGAGTCTGCCTTCTACTCCATCGTGGGACTCAGCAGCCTTGGGGTACAGGTGCCAGATGTCAAGAAA
GCGTGTACCTTCATCAAGTCCAACCTTGATCCCAGCAACGTGGATTCTCTCTTCTATGCAGCCCAGTCCA
GCCAGGTCCTCTCAGGCTGTGAGATATCTGTTTCAAATGAGACCAAAGAGCTCCTGCTGGCAGCAGTGAG
TGAAGACTCCCCCATTGCCCAGATCTACCATGCAGTTGCAGCACTCAGCGGGTTTGGGCTTCCCTTGGCA
TCCAATGAAGCCCTCGGTGCCCTTACCGCTCGCCTCGGCAAGGAAGAGACTGTGCTAGCAACGGTCCAGG
CTCTGCAGACAGCGTCCCACCTCTCCCAGCAGGCTGACCTGAGGAACATTGTAGAGGAGATTGAGGACCT
TGTTGCTCGGCTGGATGAACTAGGGGGTGTGTATCTGCAGTTTGAGGAAGGACTGGAGCTCACGGCGCTG
TTTGTTGCTGCCACCTACAAGCTCATGGACCACGTGGGGACCGAACCGTCCATGAAGGAGGATCAGGTTA
TCCAGCTCATGAACACAATCTTCAGCAAGAAGAACTTTGAGTCCCTCTCAGAAGCCTTCAGTGTGGCCTC
TGCTGCTGCTGCATTGTCCCAGAATCGCTACCACGTACCAGTGGTGGTTGTGCCCGAGGGCTCTACTTCT
GACACTCAAGAACAGGCTATCCTGAGGTTGCAGGTCAGCAATGTTTTGTCTCAGCCTCTGGCTCAAGCTG
CAGTGAAGCTGGAGCATGCTAAGTCGGCGGCTACCAGGGCTACCGTCCTGCAGAAGACGCCCTTTTCGCT
TGTGGGGAATGTTTTTGAGCTAAACTTCAAGAATGTTAAACTTTCCAGTGGCTACTATGACTTCTCTGTC
CGAGTTGAAGGTGACAGCCGTTACATTGCAAACACTGTAGAGCTTCGAGTCAAGATCTCCACTGAAGTTG
GCATCACAAATGTTGATCTTTCCACTGTGGATAAGGATCAGAGCATTGCACCCAAAACTACCCGGGTGAC
CTACCCAGCCAAAGCCAAGGGTACATTCATCGCAGACAGCCATCAGAACTTTGCCCTGTTTTTCCAGCTG
GTAGATGTGAACACCGGTGCGGAGCTCACCCCTCACCAGACGTTTGTTCGACTTCATAACCAGAAGACTG
GCCAGGAAGTGGTGTTTGTTGCTGAGCCAGATAACAAGAATGTATATAAGTTTGAACTGGACACCTCTGA
AAGGAAGATTGAATTTGACTCTGCCTCTGGCACCTACACACTCTACTTAATCATCGGGGATGCCACATTG
AAGAACCCAATCCTCTGGAACGTGGCTGACGTGGTTATCAAGTTCCCTGAGGAGGAAGCCCCCTCGACTG
TGCTGTCCCAGAGCCTGTTTACCCCAAAACAGGAAATTCAGCACCTGTTCCGAGAGCCTGAGAAGAGGCC
CCCCACAGTGGTGTCCAATACATTCACGGCCCTCATCCTCTCGCCCTTGCTCCTGCTCTTTGCACTGTGG
ATCCGGATTGGAGCCAATGTCTCCAACTTCACATTTGCTCCTAGCACAGTTATCTTCCACCTGGGACATG
CTGCGATGCTGGGCCTCATGTATATCTACTGGACTCAGCTCAACATGTTCCAGACCCTCAAGTACCTGGC
TGTCCTGGGCACTGTGACGTTTCTGGCTGGCAACCGAATGCTGGCCCAGCATGCAGTTAAGAGAACAGCA
CATTAG

Translation (631 aa):
MAPPGSSAVFLLALTITASVQALTPTHYLTKQDVERLKASLDRPFTDLESAFYSIVGLSSLGVQVPDVKK
ACTFIKSNLDPSNVDSLFYAAQSSQVLSGCEISVSNETKELLLAAVSEDSPIAQIYHAVAALSGFGLPLA
SNEALGALTARLGKEETVLATVQALQTASHLSQQADLRNIVEEIEDLVARLDELGGVYLQFEEGLELTAL
FVAATYKLMDHVGTEPSMKEDQVIQLMNTIFSKKNFESLSEAFSVASAAAALSQNRYHVPVVVVPEGSTS
DTQEQAILRLQVSNVLSQPLAQAAVKLEHAKSAATRATVLQKTPFSLVGNVFELNFKNVKLSSGYYDFSV
RVEGDSRYIANTVELRVKISTEVGITNVDLSTVDKDQSIAPKTTRVTYPAKAKGTFIADSHQNFALFFQL
VDVNTGAELTPHQTFVRLHNQKTGQEVVFVAEPDNKNVYKFELDTSERKIEFDSASGTYTLYLIIGDATL
KNPILWNVADVVIKFPEEEAPSTVLSQSLFTPKQEIQHLFREPEKRPPTVVSNTFTALILSPLLLLFALW
IRIGANVSNFTFAPSTVIFHLGHAAMLGLMYIYWTQLNMFQTLKYLAVLGTVTFLAGNRMLAQHAVKRTA
H


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH