NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Thursday, April 25, 2024, starting at 7:00 a.m. EDT for up to 120 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS17062.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17062.1 Public Mus musculus 2 Ctsa 23 108 98 CCDS HistoryNCBI Gene:19025Re-query CCDS DB by CCDS ID:17062.1Re-query CCDS DB by GeneID:19025See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17062.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103093.9 ENSMUSP00000099382.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103093.9Link to Ensembl Protein Viewer:ENSMUSP00000099382.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000103093Re-query CCDS DB by Protein ID:ENSMUSP00000099382
Original member Current member NCBI NM_001038492.2 NP_001033581.1 Accepted alive Link to Nucleotide Sequence:NM_001038492.2Link to Protein Sequence:NP_001033581.1Re-query CCDS DB by Nucleotide ID:NM_001038492Re-query CCDS DB by Protein ID:NP_001033581Link to BLAST:NP_001033581.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001033581.1 474 P16675 474 100% 0 0

Chromosomal Locations for CCDS 17062.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 164834030 164834208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164834320 164834431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164834698 164834748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164834838 164834924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164835156 164835311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164835630 164835721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164836427 164836511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164836986 164837077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164837182 164837257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164837357 164837496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164838077 164838152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164838641 164838730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164838845 164838949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164839151 164839234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1425 nt):
ATGCCCGGAACCGCGCTGTCTCCACTGCTCTTGTTGCTGCTCCTGTCCTGGGCGTCCCGGAACGAAGCAG
CTCCGGACCAGGATGAAATCGATTGTCTCCCCGGCCTGGCCAAGCAGCCCTCTTTCCGGCAATACTCCGG
CTACCTCAGAGCATCGGACTCCAAGCACTTCCACTACTGGTTTGTGGAGTCGCAGAACGACCCAAAGAAC
AGCCCCGTGGTGCTTTGGCTTAACGGGGGTCCCGGCTGCAGCTCGCTCGATGGGCTGCTTACAGAGCACG
GCCCCTTTCTGATCCAGCCAGATGGTGTCACCCTGGAGTACAACCCCTATGCTTGGAACCTGATTGCCAA
CGTGCTGTATATCGAGTCCCCAGCTGGGGTGGGCTTCTCCTACTCGGATGACAAGATGTACGTGACCAAT
GACACAGAGGTGGCGGAGAACAATTATGAAGCCCTTAAAGACTTCTTCCGCCTCTTTCCGGAATACAAGG
ACAACAAACTTTTCCTGACAGGAGAGAGCTATGCTGGCATCTACATCCCCACCTTGGCTGTACTGGTCAT
GCAGGATCCTAGCATGAATCTTCAGGGGCTGGCTGTGGGCAATGGACTTGCCTCCTATGAGCAGAACGAC
AACTCCCTGGTCTACTTTGCCTACTACCATGGCCTTCTGGGGAACAGACTTTGGACTTCACTGCAGACCC
ACTGCTGCGCTCAGAACAAGTGTAACTTCTATGACAACAAAGACCCAGAGTGTGTAAACAATCTCCTGGA
AGTGTCTCGAATTGTGGGCAAATCTGGCCTCAACATCTACAATCTCTATGCTCCGTGTGCTGGTGGGGTG
CCCGGCAGACATAGATATGAGGACACACTTGTAGTCCAGGATTTTGGCAACATCTTCACTCGCCTGCCAC
TTAAGCGGAGATTTCCTGAGGCACTGATGCGTTCTGGGGACAAGGTACGCTTGGATCCTCCCTGCACCAA
CACCACAGCCCCTTCCAACTACCTCAACAACCCCTATGTTCGGAAGGCTCTCCACATCCCCGAGTCGCTG
CCCCGCTGGGACATGTGCAACTTCTTGGTGAATTTACAGTACCGCCGCCTCTACCAAAGCATGAACTCCC
AGTACCTGAAGCTGCTCAGTTCACAGAAATACCAGATCCTGCTCTACAACGGAGATGTGGACATGGCCTG
CAACTTCATGGGCGATGAGTGGTTTGTGGATTCGCTCAACCAGAAGATGGAGGTGCAGCGCCGGCCCTGG
CTAGTGGACTACGGGGAGAGCGGAGAACAGGTAGCTGGTTTCGTGAAGGAGTGTTCACACATCACCTTCC
TCACCATCAAGGGTGCCGGACACATGGTCCCCACGGACAAGCCTCGAGCTGCTTTTACCATGTTCTCGAG
GTTCCTGAACAAAGAGCCTTACTGA

Translation (474 aa):
MPGTALSPLLLLLLLSWASRNEAAPDQDEIDCLPGLAKQPSFRQYSGYLRASDSKHFHYWFVESQNDPKN
SPVVLWLNGGPGCSSLDGLLTEHGPFLIQPDGVTLEYNPYAWNLIANVLYIESPAGVGFSYSDDKMYVTN
DTEVAENNYEALKDFFRLFPEYKDNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGNGLASYEQND
NSLVYFAYYHGLLGNRLWTSLQTHCCAQNKCNFYDNKDPECVNNLLEVSRIVGKSGLNIYNLYAPCAGGV
PGRHRYEDTLVVQDFGNIFTRLPLKRRFPEALMRSGDKVRLDPPCTNTTAPSNYLNNPYVRKALHIPESL
PRWDMCNFLVNLQYRRLYQSMNSQYLKLLSSQKYQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPW
LVDYGESGEQVAGFVKECSHITFLTIKGAGHMVPTDKPRAAFTMFSRFLNKEPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH