NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS17081.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17081.1 Public Mus musculus 2 Slc13a3 23 108 98 CCDS HistoryNCBI Gene:114644Re-query CCDS DB by CCDS ID:17081.1Re-query CCDS DB by GeneID:114644See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17081.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029208.14 ENSMUSP00000029208.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029208.14Link to Ensembl Protein Viewer:ENSMUSP00000029208.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000029208Re-query CCDS DB by Protein ID:ENSMUSP00000029208
Original member Current member NCBI NM_054055.2 NP_473396.1 Accepted alive Link to Nucleotide Sequence:NM_054055.2Link to Protein Sequence:NP_473396.1Re-query CCDS DB by Nucleotide ID:NM_054055Re-query CCDS DB by Protein ID:NP_473396Link to BLAST:NP_473396.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_473396.1 600 Q91Y63 600 100% 0 0

Chromosomal Locations for CCDS 17081.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 165406680 165406856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165408822 165408959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165411870 165412031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165419986 165420098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165424530 165424627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165425950 165426054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165427038 165427133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165430208 165430333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165434037 165434216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165437282 165437348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165445492 165445655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165448522 165448787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165473051 165473161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1803 nt):
ATGGCGGCGCTGGCGGCGCTGGCCAAGAAGGTGTGGAGCGCGCGGCGCCTCCTGGTGCTGCTGCTGGTGC
CGCTGGCTCTGCTGCCCATTCTCTTCGCCCTGCCGCCCAAGGAAGGCCGATGCCTCTATGTCATCCTGCT
CATGGCGGTGTACTGGTGCACAGAGGCCCTGCCCCTGTCAGTGACAGCTCTTCTGCCCATCATCCTCTTC
CCCTTCATGGGCATTCTGCCCTCCAGCAAGGTCTGCCCCCAGTACTTCCTCGACACCAACTTCCTCTTCC
TTAGCGGCCTGATCATGGCCAGCGCCATAGAGGAATGGAACTTGCACCGGAGAATCGCCCTCAAGGTCCT
CATGCTGGTTGGGGTCCAGCCTGCAAGGCTCATCCTGGGGATGATGGTGACCACGTCATTCCTGTCTATG
TGGCTGAGCAACACGGCCTCCACCGCAATGATGCTACCCATTGCCAGTGCCATCCTCAAGAGCCTCTTTG
GCCAGCGCGAAGCTCGGAAGGACCTTCCCCGGGAAGGCGACGAGAGCACAGCTGCTGTGCAGGGAAATGG
ACTGCGAACAGTGCCCACGGAGATGCAGTTTCTTGCCAGTTCGGAAGGAGGTCACACTGAGGATGCAGAG
GCCCCGATGGAGCTGCCTGATGACTCCAAGGAGGAGGAACACCGCAGAAACATCTGGAAGGGCTTCCTCA
TTTCCATTCCTTACTCTGCCAGCATTGGGGGCACTGCCACCCTCACGGGCACCGCCCCCAACCTCATCCT
GCTCGGCCAGCTCAAGAGTTTCTTCCCACAGTGTGATGTGGTGAATTTTGGCTCCTGGTTCATCTTCGCC
TTCCCTCTCATGCTGTTGTTCCTACTGGTGGGCTGGCTCTGGATCTCCTTCCTCTATGGTGGAATGAGCT
GGAGAAGTTGGAGGAAGAAGAAATCCAAGATACGAGCTGACGCAGAGGATCAGGCTAAAGCGGTGATCCA
GGAGGAGTTCCAGAACCTGGGGCCCATCAAGTTTGCTGAACAGGCCGTCTTCATCTTGTTCTGCACGTTT
GCCATCCTCCTCTTCTCCCGGGACCCCAAGTTCATCCCTGGCTGGGCCAGCCTCTTCGCCCCTGGGTTTG
TCTCGGATGCTGTCACCGGTGTGGCCATTGTCACCATCCTGTTCTTCTTCCCTTCCCAGAAGCCCTCACT
CAAGTGGTGGTTTGACTTCAAAGCTCCCAACTCGGAGACGGAGCCCCTGCTGAGCTGGAAGAAGGCCCAG
GAGACAGTGCCCTGGAACATTATCCTTCTTCTAGGAGGTGGCTTTGCCATGGCCAAGGGCTGTGAGGAGT
CTGGGCTATCAGCATGGATCGGTGGACAGCTGCACCCCCTGGAGCATGTCCCCCCACTGCTGGCAGTGCT
GCTCATCACCGTGGTCATCGCCTTCTTCACGGAGTTTGCCAGCAACACGGCCACCATCATCATCTTCCTG
CCCGTCCTGGCAGAGCTGGCCATCCGACTGCATGTGCACCCCTTGTACCTGATGATCCCAGGCACGGTCG
GCTGCTCCTACGCCTTCATGCTGCCGGTCTCAACACCCCCAAACTCCATTGCCTTCTCTACTGGACACTT
GCTGGTCAAAGACATGGTGCGGACGGGCCTGCTGATGAACCTGATGGGTGTCCTGCTGCTCAGCCTGGCC
ATGAACACCTGGGCACAGACCATCTTCCAGCTGGGCACCTTCCCAGACTGGGCCAACACCCATGCTGCTA
ACGCCACCGCACTGCCACCAGCCTTGACCAACAACACAGTTCAAACCTTCTGA

Translation (600 aa):
MAALAALAKKVWSARRLLVLLLVPLALLPILFALPPKEGRCLYVILLMAVYWCTEALPLSVTALLPIILF
PFMGILPSSKVCPQYFLDTNFLFLSGLIMASAIEEWNLHRRIALKVLMLVGVQPARLILGMMVTTSFLSM
WLSNTASTAMMLPIASAILKSLFGQREARKDLPREGDESTAAVQGNGLRTVPTEMQFLASSEGGHTEDAE
APMELPDDSKEEEHRRNIWKGFLISIPYSASIGGTATLTGTAPNLILLGQLKSFFPQCDVVNFGSWFIFA
FPLMLLFLLVGWLWISFLYGGMSWRSWRKKKSKIRADAEDQAKAVIQEEFQNLGPIKFAEQAVFILFCTF
AILLFSRDPKFIPGWASLFAPGFVSDAVTGVAIVTILFFFPSQKPSLKWWFDFKAPNSETEPLLSWKKAQ
ETVPWNIILLLGGGFAMAKGCEESGLSAWIGGQLHPLEHVPPLLAVLLITVVIAFFTEFASNTATIIIFL
PVLAELAIRLHVHPLYLMIPGTVGCSYAFMLPVSTPPNSIAFSTGHLLVKDMVRTGLLMNLMGVLLLSLA
MNTWAQTIFQLGTFPDWANTHAANATALPPALTNNTVQTF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH