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Report for CCDS17109.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17109.1 Public Mus musculus 2 Dpm1 23 108 98 CCDS HistoryNCBI Gene:13480Re-query CCDS DB by CCDS ID:17109.1Re-query CCDS DB by GeneID:13480See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17109.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000154111.7 ENSMUSP00000118776.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000154111.7Link to Ensembl Protein Viewer:ENSMUSP00000118776.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000154111Re-query CCDS DB by Protein ID:ENSMUSP00000118776
Original member Current member EBI ENSMUST00000138667.1 ENSMUSP00000139070.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000138667.1Link to Ensembl Protein Viewer:ENSMUSP00000139070.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000138667Re-query CCDS DB by Protein ID:ENSMUSP00000139070
Original member Current member NCBI NM_010072.4 NP_034202.1 Accepted alive Link to Nucleotide Sequence:NM_010072.4Link to Protein Sequence:NP_034202.1Re-query CCDS DB by Nucleotide ID:NM_010072Re-query CCDS DB by Protein ID:NP_034202Link to BLAST:NP_034202.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034202.1 260 O70152 260 100% 0 0

Chromosomal Locations for CCDS 17109.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 168210532 168210636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 168211366 168211480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 168212960 168213028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 168217681 168217776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 168219220 168219245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 168220037 168220113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 168223121 168223154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 168227403 168227502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 168230193 168230353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (783 nt):
ATGGCTTCCACGGGGGCGAGTCGCAGTCTTGCTGCGTCTCCGCGGCCGCCGCAGGGCCGCTCCTCGCGAC
AGGACAAGTACTCGGTGCTGTTGCCCACCTACAACGAACGGGAGAACCTGCCGCTCATCGTGTGGCTGCT
GGTGAAGAGCTTCTCCGAGAGTGCAATCAACTATGAAATTATAATCATAGATGATGGAAGCCCAGACGGG
ACAAGAGAAGTTGCTGAACAACTGGCAGAGATCTATGGGCCCGACAGAATTCTCCTAAGACCACGAGAGA
AAAAGCTGGGTCTCGGAACTGCCTACATTCATGGAATCAAACACGCCACGGGGAACTATGTGATCATCAT
GGATGCTGACCTCTCCCACCATCCCAAATTTATTCCTGAATTTATCAGGAAACAAAAGGAGGGTAATTTT
GATATTGTCTCTGGAACTCGATACAAGGGGAATGGGGGTGTTTATGGATGGGATTTGAAAAGAAAGATAA
TCAGCCGTGGGGCCAATTTTATAACTCAAATTCTGCTGAGACCTGGAGCGTCAGACTTAACAGGAAGCTT
CAGATTATACCGAAAAGAAGTTCTACAGAAATTAATAGAAAAATGTGTCTCCAAAGGCTATGTCTTTCAG
ATGGAAATGATTGTTCGAGCAAGACAGATGAATTACACTATTGGTGAGGTTCCAATTTCATTTGTGGATC
GAGTTTATGGTGAATCCAAGTTGGGAGGAAATGAAATAGTCTCGTTCCTGAAAGGGTTATTGACTCTCTT
TGCTACCACATAA

Translation (260 aa):
MASTGASRSLAASPRPPQGRSSRQDKYSVLLPTYNERENLPLIVWLLVKSFSESAINYEIIIIDDGSPDG
TREVAEQLAEIYGPDRILLRPREKKLGLGTAYIHGIKHATGNYVIIMDADLSHHPKFIPEFIRKQKEGNF
DIVSGTRYKGNGGVYGWDLKRKIISRGANFITQILLRPGASDLTGSFRLYRKEVLQKLIEKCVSKGYVFQ
MEMIVRARQMNYTIGEVPISFVDRVYGESKLGGNEIVSFLKGLLTLFATT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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