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Report for CCDS17240.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17240.1 Public Mus musculus 3 Impa1 23 108 98 CCDS HistoryNCBI Gene:55980Re-query CCDS DB by CCDS ID:17240.1Re-query CCDS DB by GeneID:55980See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17240.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065938.14 ENSMUSP00000068174.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065938.14Link to Ensembl Protein Viewer:ENSMUSP00000068174.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000065938Re-query CCDS DB by Protein ID:ENSMUSP00000068174
Original member NCBI NM_018864.6 NP_061352.2 Updated not alive Link to Nucleotide Sequence:NM_018864.6Link to Protein Sequence:NP_061352.2Re-query CCDS DB by Nucleotide ID:NM_018864Re-query CCDS DB by Protein ID:NP_061352
Current member NCBI NM_018864.7 NP_061352.2 Accepted alive Link to Nucleotide Sequence:NM_018864.7Link to Protein Sequence:NP_061352.2Re-query CCDS DB by Nucleotide ID:NM_018864Re-query CCDS DB by Protein ID:NP_061352Link to BLAST:NP_061352.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061352.2 277 O55023 277 99.278% 0 2

Chromosomal Locations for CCDS 17240.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 10315186 10315301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 10316103 10316254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 10321612 10321720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 10322904 10323012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 10324052 10324097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 10326107 10326211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 10328345 10328478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 10328943 10329005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (834 nt):
ATGGCAGACCCTTGGCAGGAGTGCATGGACTATGCAGTAATCCTCGCGAGGCAAGCTGGAGAGATGATTC
GTGAAGCTTTAAAAAATGAGATGGATGTCATGATTAAAAGTTCTCCAGCCGACTTGGTAACAGTTACTGA
CCAAAAAGTTGAAAAAATGCTCATGTCTTCTATAAAGGAAAAGTATCCATGTCACAGCTTCATTGGTGAA
GAGTCTGTGGCAGCTGGGGAGAAGACGGTCTTCACAGAGCAGCCCACGTGGGTCATTGACCCCATTGATG
GAACGACTAACTTCGTGCATCGGTTTCCCTTTGTAGCTGTTTCAATTGGCTTCCTTGTGAATAAAGAGAT
GGAGTTTGGAATTGTGTACAGCTGTGTGGAAGATAAGATGTACACCGGCAGGAAAGGGAAAGGTGCCTTT
TGTAACGGTCAGAAGCTTCAGGTGTCCCAGCAGGAAGACATTACCAAGTCACTCTTGGTGACCGAGTTGG
GCTCGTCCAGAAAGCCCGAGACTTTACGGATCGTTCTCTCCAACATGGAAAAGCTGTGTTCCATCCCCAT
CCATGGAATCCGGAGTGTTGGAACAGCTGCTGTTAATATGTGCCTTGTGGCAACGGGAGGAGCAGATGCC
TATTATGAGATGGGAATCCACTGCTGGGACATGGCGGGAGCTGGCATCATTGTCACCGAGGCAGGCGGAG
TGCTCATGGATGTCACGGGTGGACCGTTCGATCTGATGTCTCGGAGAATAATTGCCGCAAATAGTATAAC
ATTAGCCAAAAGAATAGCCAAAGAAATTGAGATAATACCTTTGCAAAGAGACGACGAAAGCTAG

Translation (277 aa):
MADPWQECMDYAVILARQAGEMIREALKNEMDVMIKSSPADLVTVTDQKVEKMLMSSIKEKYPCHSFIGE
ESVAAGEKTVFTEQPTWVIDPIDGTTNFVHRFPFVAVSIGFLVNKEMEFGIVYSCVEDKMYTGRKGKGAF
CNGQKLQVSQQEDITKSLLVTELGSSRKPETLRIVLSNMEKLCSIPIHGIRSVGTAAVNMCLVATGGADA
YYEMGIHCWDMAGAGIIVTEAGGVLMDVTGGPFDLMSRRIIAANSITLAKRIAKEIEIIPLQRDDES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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