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Report for CCDS17247.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17247.1 Public Mus musculus 3 Car13 23 108 98 CCDS HistoryNCBI Gene:71934Re-query CCDS DB by CCDS ID:17247.1Re-query CCDS DB by GeneID:71934See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17247.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029071.8 ENSMUSP00000029071.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029071.8Link to Ensembl Protein Viewer:ENSMUSP00000029071.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000029071Re-query CCDS DB by Protein ID:ENSMUSP00000029071
Original member Current member NCBI NM_024495.5 NP_078771.1 Accepted alive Link to Nucleotide Sequence:NM_024495.5Link to Protein Sequence:NP_078771.1Re-query CCDS DB by Nucleotide ID:NM_024495Re-query CCDS DB by Protein ID:NP_078771Link to BLAST:NP_078771.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_078771.1 262 Q9D6N1 262 100% 0 0

Chromosomal Locations for CCDS 17247.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 14641809 14641845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14645037 14645234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14650659 14650777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14654884 14654979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14656229 14656291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14656909 14657064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14661455 14661574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (789 nt):
ATGGCGAGGCTGAGCTGGGGGTACGGCGAGCACAACGGTCCCATTCACTGGAATGAATTGTTCCCTATTG
CTGATGGTGATCAGCAGTCTCCAATTGAGATTAAAACCAAAGAAGTGAAATACGACTCCTCACTCCGACC
TCTCAGTATCAAGTATGATCCTGCCTCAGCTAAAATCATCAGCAATAGTGGCCATTCCTTCAACGTTGAC
TTTGACGACACGGAGGACAAATCAGTTCTGCGTGGAGGTCCTCTCACTGGGAACTACAGGTTGCGGCAGT
TCCATTTGCACTGGGGGTCAGCAGATGATCATGGCTCAGAGCATGTGGTAGACGGAGTGAGGTATGCTGC
AGAGCTGCATGTTGTCCACTGGAATTCAGACAAATACCCGAGCTTTGTAGAGGCAGCTCATGAGTCCGAT
GGGCTGGCTGTCCTGGGAGTATTTCTACAGATTGGGGAACACAATCCTCAACTGCAAAAGATCACTGATA
TTTTGGATTCCATAAAGGAAAAGGGTAAACAAACACGGTTCACAAATTTTGACCCGTTATGCTTGCTTCC
ATCATCTTGGGACTACTGGACATACCCTGGCTCTCTGACAGTTCCACCTCTTCTTGAGAGTGTCACGTGG
ATTGTTTTAAAACAACCTATAAGTATCAGCTCTCAACAGCTGGCCAGATTCCGAAGCCTCTTGTGCACAG
CTGAGGGAGAGAGTGCGGCTTTTTTGTTAAGCAATCACCGTCCACCACAGCCCTTGAAGGGCCGCAGAGT
GAGAGCATCTTTCTATTAG

Translation (262 aa):
MARLSWGYGEHNGPIHWNELFPIADGDQQSPIEIKTKEVKYDSSLRPLSIKYDPASAKIISNSGHSFNVD
FDDTEDKSVLRGGPLTGNYRLRQFHLHWGSADDHGSEHVVDGVRYAAELHVVHWNSDKYPSFVEAAHESD
GLAVLGVFLQIGEHNPQLQKITDILDSIKEKGKQTRFTNFDPLCLLPSSWDYWTYPGSLTVPPLLESVTW
IVLKQPISISSQQLARFRSLLCTAEGESAAFLLSNHRPPQPLKGRRVRASFY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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