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Report for CCDS17375.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17375.1 Public Mus musculus 3 Aadac 23 108 98 CCDS HistoryNCBI Gene:67758Re-query CCDS DB by CCDS ID:17375.1Re-query CCDS DB by GeneID:67758See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17375.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029325.4 ENSMUSP00000029325.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029325.4Link to Ensembl Protein Viewer:ENSMUSP00000029325.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000029325Re-query CCDS DB by Protein ID:ENSMUSP00000029325
Original member Current member NCBI NM_023383.1 NP_075872.1 Accepted alive Link to Nucleotide Sequence:NM_023383.1Link to Protein Sequence:NP_075872.1Re-query CCDS DB by Nucleotide ID:NM_023383Re-query CCDS DB by Protein ID:NP_075872Link to BLAST:NP_075872.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075872.1 398 Q99PG0 398 100% 0 0

Chromosomal Locations for CCDS 17375.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 60031807 60031941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 60035811 60036033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 60037267 60037336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 60038339 60038510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 60039483 60040079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1197 nt):
ATGGGGAAAACCATTTCTCTTCTCATCTCTGTGGTGCTTGTAGCTTATTATCTTTATATACCGCTTCCAG
ATGCTATTGAAGAGCCTTGGAAGGTAGTATGGGAAACTGCCTTTGTAAAGATAGGAACAGATTTGGCTTC
ATTTGGTGAACTTTTGGGAATCAGTCATTTCATGGAAACGATACAGTTACTTATGAGTTTTCAAGAAGTC
CCACCCACGTCTGATGAGCATGTCACTGTGATGGAGACAGCTTTCGACAGTGTTCCCGTCCGCATATACA
TACCCAAAAGAAAGTCAATGGCTCTCAGGCGGGGCTTGTTTTATATTCATGGTGGTGGCTGGTGTTTGGG
GAGTGCTGCTCACTTCTCCTATGACACTCTATCGAGATGGACAGCCCATAAACTTGATGCTGTTGTTGTG
TCAACTGACTATGGCTTAGCCCCAAAACACCATTTTCCAAGACAGTTTGAAGATGTGTATCGTAGTTTAC
GATGGTTCTTACAAGAGGACGTCCTTGAAAAATATGGTGTAGATCCTAGGAGAGTCGGTGTGTCTGGAGA
CAGTGCTGGTGGAAACTTAGCCGCAGCTGTGACCCAACAGCTTATACAAGATCCAGATGTCAAGATCAAA
CTCAAGGTCCAAGCCTTAATATATCCTGCCCTTCAGGCTCTTGATACGAATGTACCATCACAACAAGAAG
GTTCCCATTTTCCAGTTTTAACCAGGTCATTAATGGTCAGGTTCTGGAGTGAATACTTTACTACAGACCG
AGGCCTGGAAAAAGCCATGCTTCTCAACCAACATGTACCCATGGAATCTAGCCACTTGTTACAGTTTGTG
AATTGGAGTTCCTTGCTCCCTGAGAGATACAAGAAAAGTCCCGTTTACAAAAATCCCACTCCTGGTAGTT
CTGAGCTGGCTCAAAAGTATCCAGGGTTCATAGATGTGAAGGCATGCCCTCTGTTGGCCAATGACAATAT
ATTGCATCATTTACCTAAGACCTATATCATCACTTGCCAGTATGATGTCCTAAGAGATGATGGACTCATG
TATGTCAAGCGGCTTCAGAATGTTGGAGTTCATGTGACTCATCACCATGTGGAAGATGGATTCCATGGAA
CGTTTTCCTTTCCTGGTTTAAAACTTTCAGAGAGGATGAAAAATCAGTACTTGAGTTGGCTTATCAAAAA
TCTGTAA

Translation (398 aa):
MGKTISLLISVVLVAYYLYIPLPDAIEEPWKVVWETAFVKIGTDLASFGELLGISHFMETIQLLMSFQEV
PPTSDEHVTVMETAFDSVPVRIYIPKRKSMALRRGLFYIHGGGWCLGSAAHFSYDTLSRWTAHKLDAVVV
STDYGLAPKHHFPRQFEDVYRSLRWFLQEDVLEKYGVDPRRVGVSGDSAGGNLAAAVTQQLIQDPDVKIK
LKVQALIYPALQALDTNVPSQQEGSHFPVLTRSLMVRFWSEYFTTDRGLEKAMLLNQHVPMESSHLLQFV
NWSSLLPERYKKSPVYKNPTPGSSELAQKYPGFIDVKACPLLANDNILHHLPKTYIITCQYDVLRDDGLM
YVKRLQNVGVHVTHHHVEDGFHGTFSFPGLKLSERMKNQYLSWLIKNL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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