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Report for CCDS17529.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17529.1 Public Mus musculus 3 Npr1 23 108 98 CCDS HistoryNCBI Gene:18160Re-query CCDS DB by CCDS ID:17529.1Re-query CCDS DB by GeneID:18160See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17529.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029540.12 ENSMUSP00000029540.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029540.12Link to Ensembl Protein Viewer:ENSMUSP00000029540.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000029540Re-query CCDS DB by Protein ID:ENSMUSP00000029540
Original member Current member NCBI NM_008727.5 NP_032753.5 Accepted alive Link to Nucleotide Sequence:NM_008727.5Link to Protein Sequence:NP_032753.5Re-query CCDS DB by Nucleotide ID:NM_008727Re-query CCDS DB by Protein ID:NP_032753Link to BLAST:NP_032753.5

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032753.5 1057 P18293 1057 100% 0 0

Chromosomal Locations for CCDS 17529.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 90451120 90451182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90451306 90451397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90454818 90454916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90455092 90455266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90455701 90455769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90455896 90456019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90456163 90456309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90456909 90457077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90457321 90457476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90458072 90458228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90458322 90458393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90458632 90458736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90459045 90459122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90459323 90459397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90459933 90460053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90461090 90461174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90461365 90461500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90462166 90462257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90462568 90462703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90463135 90463248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90463811 90464010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90464795 90465503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3174 nt):
ATGCCGGGTTCCCGACGCGTCCGTCCGCGCCTAAGGGCGCTGCTGCTGCTACCGCCGCTGCTGCTGCTCC
GAAGCGGCCACGCGAGCGACCTGACCGTGGCCGTGGTGCTGCCGCTGACCAACACCTCGTACCCGTGGTC
TTGGGCGCGTGTAGGGCCGGCGGTGGAACTGGCTCTCGGGAGGGTGAAGGCTCGGCCGGACTTGCTGCCG
GGTTGGACGGTCCGTATGGTGCTGGGCAGCAGCGAGAACGCGGCGGGCGTCTGCTCCGACACCGCTGCAC
CGCTGGCCGCGGTGGATCTCAAGTGGGAGCACAGCCCCGCGGTGTTCCTGGGCCCCGGCTGCGTATACTC
TGCTGCCCCGGTGGGACGCTTCACCGCGCACTGGCGGGTGCCGCTGCTGACGGCTGGCGCCCCGGCTCTG
GGCATCGGGGTGAAGGATGAGTACGCGTTAACCACCCGCACAGGACCCAGCCATGTCAAGCTGGGCGACT
TCGTGACGGCGCTGCATCGACGGCTGGGCTGGGAGCACCAGGCGCTTGTGCTCTATGCAGATCGGCTGGG
CGACGACCGGCCGTGCTTCTTCATAGTGGAGGGGCTGTACATGCGGGTGCGTGAGCGACTCAACATCACA
GTAAATCACCAGGAGTTCGTCGAGGGCGACCCGGACCACTACACCAAGCTACTGCGGACCGTGCAGCGCA
AGGGCAGAGTTATCTACATCTGCAGTTCTCCGGATGCCTTCAGGAATCTGATGCTTTTGGCCCTGGATGC
TGGCCTGACTGGGGAGGACTATGTTTTCTTCCACCTGGATGTGTTTGGGCAAAGCCTTCAGGGTGCTCAG
GGCCCTGTTCCCAGGAAGCCCTGGGAAAGAGACGATGGGCAGGATAGGAGAGCCCGCCAGGCCTTTCAGG
CTGCCAAAATTATTACTTACAAAGAACCCGATAATCCTGAGTACTTGGAATTCCTGAAGCAGCTAAAACT
CTTGGCTGACAAGAAATTCAACTTCACCATGGAGGATGGCCTGAAAAATATCATCCCAGCATCCTTCCAT
GACGGGCTCCTGCTCTATGTCCAGGCAGTGACAGAGACTCTGGCACAGGGGGGCACTGTCACTGATGGAG
AGAACATCACTCAGCGGATGTGGAACCGAAGCTTCCAAGGTGTGACAGGATACCTGAAAATTGATAGAAA
TGGAGATCGGGACACTGATTTCTCCCTCTGGGATATGGACCCCGAGACAGGTGCCTTCAGGGTTGTCCTG
AACTTTAATGGTACTTCCCAGGAGCTGATGGCTGTGTCAGAACACAGATTATACTGGCCTCTGGGATACC
CACCTCCTGACATCCCTAAATGTGGCTTTGACAATGAGGACCCAGCCTGCAACCAAGACCACTTTTCCAC
ACTGGAGGTTCTGGCTTTGGTGGGCAGCCTCTCTCTGGTTAGCTTTCTGATCGTGTCTTTCTTCATATAC
AGGAAGATGCAGCTGGAAAAGGAGCTGGTCTCAGAGTTGTGGCGGGTGCGCTGGGAGGACTTGCAGCCCA
GCAGCCTGGAGAGGCACCTTCGGAGCGCTGGCAGTCGGCTGACCCTGAGTGGGCGAGGCTCCAATTATGG
CTCCCTGCTAACCACGGAGGGCCAGTTCCAAGTCTTTGCCAAGACAGCATACTATAAGGGCAACCTCGTG
GCTGTGAAACGTGTGAACCGGAAACGCATTGAGTTGACACGAAAAGTCCTGTTTGAACTTAAACATATGC
GGGATGTGCAGAATGAGCACTTGACCAGATTTGTGGGAGCTTGTACCGACCCTCCCAACATCTGTATCCT
CACAGAGTACTGTCCCCGTGGGAGCCTACAGGACATTCTAGAGAATGAGAGTATTACCCTGGACTGGATG
TTTCGGTACTCACTCACCAATGACATTGTCAAGGGAATGCTCTTTCTACACAACGGGGCCATTGGTTCCC
ATGGGAACCTCAAGTCATCCAACTGCGTGGTAGATGGACGTTTTGTGTTAAAGATCACAGACTATGGGCT
CGAGAGCTTCAGAGACCCGGAGCCAGAGCAAGGACACACCCTCTTTGCCAAAAAACTGTGGACTGCACCT
GAGCTCCTGCGAATGGCTTCCCCACCTGCCCGTGGCTCCCAAGCTGGGGATGTCTACAGTTTTGGTATCA
TCCTTCAGGAAATTGCCCTAAGAAGTGGGGTCTTCTATGTGGAAGGTTTGGACCTCAGCCCAAAAGAGAT
CATTGAGCGTGTGACTCGGGGCGAGCAGCCCCCATTCCGACCTTCCATGGATCTGCAGAGCCACCTGGAG
GAACTGGGGCAGCTGATGCAGAGGTGCTGGGCAGAGGATCCTCAGGAGCGGCCACCCTTTCAACAGATCC
GCCTGGCGCTGCGCAAGTTCAACAAGGAGAACAGCAGCAACATCCTGGACAACCTGCTGTCACGCATGGA
ACAGTACGCCAACAACCTGGAGGAACTGGTAGAGGAGAGAACACAGGCTTATCTGGAGGAGAAGCGCAAA
GCTGAGGCCCTGCTTTACCAGATTCTGCCTCACTCTGTGGCTGAGCAGCTGAAGAGAGGCGAGACAGTCC
AGGCTGAGGCATTTGATAGTGTTACTATCTATTTCAGTGATATCGTGGGCTTTACAGCTCTTTCAGCAGA
GAGCACACCCATGCAGGTGGTCACCCTGCTCAATGATCTGTACACCTGTTTTGATGCTGTCATAGACAAC
TTTGATGTGTACAAGGTAGAGACCATTGGTGATGCTTACATGGTGGTATCAGGGCTCCCAGTGAGGAATG
GACAGCTCCATGCCCGAGAGGTAGCCCGAATGGCACTTGCACTGCTCGATGCTGTACGCTCCTTCCGCAT
CCGCCATAGGCCCCAGGAACAGCTGCGCTTGCGCATTGGAATTCACACAGGTCCCGTGTGTGCTGGTGTG
GTAGGGCTAAAGATGCCCCGATACTGCCTCTTTGGAGACACAGTCAACACAGCTTCAAGAATGGAGTCTA
ATGGGGAAGCCCTCAGGATCCACTTGTCTTCGGAGACCAAGGCTGTGCTGGAAGAGTTCGATGGTTTTGA
GCTGGAGCTCCGAGGTGACGTGGAAATGAAGGGCAAAGGCAAGGTTCGAACCTATTGGCTCCTCGGGGAG
CGGGGATGCAGCACTCGAGGCTGA

Translation (1057 aa):
MPGSRRVRPRLRALLLLPPLLLLRSGHASDLTVAVVLPLTNTSYPWSWARVGPAVELALGRVKARPDLLP
GWTVRMVLGSSENAAGVCSDTAAPLAAVDLKWEHSPAVFLGPGCVYSAAPVGRFTAHWRVPLLTAGAPAL
GIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQALVLYADRLGDDRPCFFIVEGLYMRVRERLNIT
VNHQEFVEGDPDHYTKLLRTVQRKGRVIYICSSPDAFRNLMLLALDAGLTGEDYVFFHLDVFGQSLQGAQ
GPVPRKPWERDDGQDRRARQAFQAAKIITYKEPDNPEYLEFLKQLKLLADKKFNFTMEDGLKNIIPASFH
DGLLLYVQAVTETLAQGGTVTDGENITQRMWNRSFQGVTGYLKIDRNGDRDTDFSLWDMDPETGAFRVVL
NFNGTSQELMAVSEHRLYWPLGYPPPDIPKCGFDNEDPACNQDHFSTLEVLALVGSLSLVSFLIVSFFIY
RKMQLEKELVSELWRVRWEDLQPSSLERHLRSAGSRLTLSGRGSNYGSLLTTEGQFQVFAKTAYYKGNLV
AVKRVNRKRIELTRKVLFELKHMRDVQNEHLTRFVGACTDPPNICILTEYCPRGSLQDILENESITLDWM
FRYSLTNDIVKGMLFLHNGAIGSHGNLKSSNCVVDGRFVLKITDYGLESFRDPEPEQGHTLFAKKLWTAP
ELLRMASPPARGSQAGDVYSFGIILQEIALRSGVFYVEGLDLSPKEIIERVTRGEQPPFRPSMDLQSHLE
ELGQLMQRCWAEDPQERPPFQQIRLALRKFNKENSSNILDNLLSRMEQYANNLEELVEERTQAYLEEKRK
AEALLYQILPHSVAEQLKRGETVQAEAFDSVTIYFSDIVGFTALSAESTPMQVVTLLNDLYTCFDAVIDN
FDVYKVETIGDAYMVVSGLPVRNGQLHAREVARMALALLDAVRSFRIRHRPQEQLRLRIGIHTGPVCAGV
VGLKMPRYCLFGDTVNTASRMESNGEALRIHLSSETKAVLEEFDGFELELRGDVEMKGKGKVRTYWLLGE
RGCSTRG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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