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Report for CCDS17599.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17599.1 Public Mus musculus 3 Pi4kb 23 108 98 CCDS HistoryNCBI Gene:107650Re-query CCDS DB by CCDS ID:17599.1Re-query CCDS DB by GeneID:107650See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17599.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072287.11 ENSMUSP00000072134.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072287.11Link to Ensembl Protein Viewer:ENSMUSP00000072134.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000072287Re-query CCDS DB by Protein ID:ENSMUSP00000072134
Original member Current member NCBI NM_175356.3 NP_780565.2 Accepted alive Link to Nucleotide Sequence:NM_175356.3Link to Protein Sequence:NP_780565.2Re-query CCDS DB by Nucleotide ID:NM_175356Re-query CCDS DB by Protein ID:NP_780565Link to BLAST:NP_780565.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780565.2 801 Q8BKC8-2 801 100% 0 0

Chromosomal Locations for CCDS 17599.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 94984011 94984919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94992966 94993193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94994161 94994388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94995835 94995944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94996580 94996684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94996852 94996975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94998848 94999113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95004240 95004372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95004634 95004754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95005759 95005940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2406 nt):
ATGGGAGACATGGTAGTGGAGCCTGCCACCCTGAAGCCAACTTCTGAGCCTACTCCTAGCCCATCAGGGA
ATAATGGGGGCTCCCTACTAAGCGTCATCACGGAGGGGGTCGGGGAACTGTCAGTGATTGACCCTGAGGT
GGCCCAGAAGGCCTGCCAGGAGGTACTGGAGAAAGTCAAGCTTTTGCATGGAGGTGTAGCCATCTCTAGC
AAAGGCACCCCGCTGGAGTTGGTTAATGGGGATGGTGTGGACAATGAAATCCGTTGCCTAGATGATCCAC
CTGCCCAGATCAGGGAGGAAGAAGATGAGATGGGGGCTGGTGTGGCCTCTGGCACAGCCAAAGGAGCAAG
ACGACGACGACAGAACAACTCAGCCAAACAGTCTTGGCTCCTGAGGCTGTTTGAGTCAAAACTATTTGAC
ATCTCTATGGCTATTTCATACTTGTATAACTCCAAGGAGCCTGGAGTGCAAGCCTACATTGGCAACCGGC
TCTTCTACTTTCGCAATGAGGATGTGGACTTCTATTTGCCCCAGTTGCTTAACATGTATATCCACATGGA
TGAGGATGTGGGCGATGCCATTAAGCCCTACATAGTCCACCGCTGTCGCCAGAGCATCAACTTTTCCCTC
CAGTGTGCCCTGTTGCTTGGGGCCTACTCTTCAGACATGCACATTTCCACTCAGCGACACTCGCGAGGGA
CCAAGTTACGGAAGCTAATCCTCTCAGATGAGCTGAAGCCAGCTCACCGAAAGAGGGAGCTGCCGACATT
AAGCCCAGCCCCTGACACAGGGCTGTCTCCCTCTAAAAGGACTCACCAGCGTTCTAAGTCAGATGCTACG
GCCAGCATAAGTCTCAGCAGCAACCTGAAACGAACAGCCAGCAACCCTAAAGTGGAGAATGAGGATGAGC
CTGTCCGGCTGGCCCCTGAGCGAGAATTCATCAAGTCTTTGATGGCAATCGGCAAACGGCTGGCCACGCT
CCCCACTAAAGAGCAAAAAACACAAAGGCTGATCTCAGAGCTTTCCCTGCTCAACCATAAGCTCCCTGCC
CGAGTCTGGCTGCCCACGGCTGGCTTTGACCACCACGTGGTCCGTGTGCCCCACACACAAGCTGTTGTTC
TCAATTCCAAGGATAAGGCTCCCTACCTGATCTACGTGGAAGTTCTCGAATGTGAAAACTTTGACACAAC
TAGTGTTCCTGCCCGGATTCCTGAAAACCGAATTCGGAGTACACGGTCTGTAGAGAACCTGCCTGAATGT
GGTATCACTCATGAGCAGCGAGCTGGCAGCTTCAGCACTGTGCCCAATTATGACAATGATGATGAAGCCT
GGTCAGTGGATGATATAGGCGAGCTGCAAGTGGAGCTCCCTGAAGTGCACACCAACAGCTGTGACAACAT
CTCCCAGTTCTCGGTGGACAGCATCACCAGCCAGGAGAGCAAGGAGCCTGTGTTCATTGCAGCAGGGGAC
ATCCGACGGCGCCTTTCAGAACAGCTGGCTCATACTCCTACAGCCTTCAAACGAGACCCTGAAGACCCTT
CTGCAGTTGCCCTCAAAGAGCCCTGGCAGGAGAAAGTGCGGAGGATCAGAGAAGGTTCCCCGTATGGCCA
TCTTCCCAATTGGCGACTCCTTTCAGTCATTGTCAAGTGTGGAGATGACCTTCGCCAGGAGCTGCTGGCT
TTCCAGGTGTTGAAACAACTGCAGTCCATTTGGGAACAGGAGCGAGTGCCTCTTTGGATCAAGCCATATA
AGATTCTTGTGATTTCAGCTGACAGTGGCATGATTGAACCAGTAGTCAACGCTGTGTCCATCCACCAGGT
GAAGAAACAGTCACAGCTCTCCTTGCTCGATTACTTCCTACAGGAACATGGCAGTTATACCACTGAGGCA
TTCCTCAGTGCCCAGCGCAATTTTGTGCAAAGCTGTGCTGGCTACTGCTTGGTCTGCTACCTATTGCAAG
TCAAGGACAGGCACAACGGGAACATCCTTCTGGACGCAGAAGGTCACATCATCCACATCGACTTTGGCTT
CATCCTTTCCAGCTCACCCCGAAACCTGGGCTTCGAGACATCAGCCTTTAAGCTGACCACAGAATTTGTG
GATGTAATGGGTGGCCTGAACGGTGATATGTTCAACTACTACAAGATGCTCATGCTGCAAGGGCTGATTG
CTGCTCGGAAGCACATGGACAAGGTGGTACAGATTGTGGAGATCATGCAGCAAGGTTCTCAGCTTCCTTG
CTTCCATGGCTCCAGCACCATTCGCAACCTCAAAGAGAGGTTCCACATGAGCATGACTGAGGAGCAGCTG
CAGCTGCTGGTGGAGCAGATGGTGGACGGCAGCATGAGGTCCATCACCACCAAACTCTACGATGGCTTCC
AGTACCTCACCAATGGCATCATGTGA

Translation (801 aa):
MGDMVVEPATLKPTSEPTPSPSGNNGGSLLSVITEGVGELSVIDPEVAQKACQEVLEKVKLLHGGVAISS
KGTPLELVNGDGVDNEIRCLDDPPAQIREEEDEMGAGVASGTAKGARRRRQNNSAKQSWLLRLFESKLFD
ISMAISYLYNSKEPGVQAYIGNRLFYFRNEDVDFYLPQLLNMYIHMDEDVGDAIKPYIVHRCRQSINFSL
QCALLLGAYSSDMHISTQRHSRGTKLRKLILSDELKPAHRKRELPTLSPAPDTGLSPSKRTHQRSKSDAT
ASISLSSNLKRTASNPKVENEDEPVRLAPEREFIKSLMAIGKRLATLPTKEQKTQRLISELSLLNHKLPA
RVWLPTAGFDHHVVRVPHTQAVVLNSKDKAPYLIYVEVLECENFDTTSVPARIPENRIRSTRSVENLPEC
GITHEQRAGSFSTVPNYDNDDEAWSVDDIGELQVELPEVHTNSCDNISQFSVDSITSQESKEPVFIAAGD
IRRRLSEQLAHTPTAFKRDPEDPSAVALKEPWQEKVRRIREGSPYGHLPNWRLLSVIVKCGDDLRQELLA
FQVLKQLQSIWEQERVPLWIKPYKILVISADSGMIEPVVNAVSIHQVKKQSQLSLLDYFLQEHGSYTTEA
FLSAQRNFVQSCAGYCLVCYLLQVKDRHNGNILLDAEGHIIHIDFGFILSSSPRNLGFETSAFKLTTEFV
DVMGGLNGDMFNYYKMLMLQGLIAARKHMDKVVQIVEIMQQGSQLPCFHGSSTIRNLKERFHMSMTEEQL
QLLVEQMVDGSMRSITTKLYDGFQYLTNGIM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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