NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS17702.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17702.1 Public Mus musculus 3 Slc16a1 23 108 98 CCDS HistoryNCBI Gene:20501Re-query CCDS DB by CCDS ID:17702.1Re-query CCDS DB by GeneID:20501See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17702.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046212.1 ENSMUSP00000045216.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046212.1Link to Ensembl Protein Viewer:ENSMUSP00000045216.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000046212Re-query CCDS DB by Protein ID:ENSMUSP00000045216
Original member Current member NCBI NM_009196.4 NP_033222.1 Accepted alive Link to Nucleotide Sequence:NM_009196.4Link to Protein Sequence:NP_033222.1Re-query CCDS DB by Nucleotide ID:NM_009196Re-query CCDS DB by Protein ID:NP_033222Link to BLAST:NP_033222.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033222.1 493 P53986 493 100% 0 0

Chromosomal Locations for CCDS 17702.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 104649301 104649517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104650886 104651029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104652742 104653587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104655448 104655722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1482 nt):
ATGCCACCTGCGATTGGAGGGCCAGTGGGATACACCCCCCCAGATGGAGGCTGGGGGTGGGCAGTGTTAG
TCGGAGCCTTCATTTCTATTGGCTTCTCCTATGCATTTCCCAAATCCATCACTGTCTTCTTTAAAGAGAT
AGAAGTTATATTCAGTGCAACGACCAGTGAAGTATCATGGATATCATCTATAATGTTGGCTGTCATGTAT
GCTGGAGGTCCTATCAGCAGTATCTTGGTGAATAAATACGGCAGCCGTCCAGTAATGATCGCTGGTGGTT
GTCTGTCTGGTTGCGGCTTGATCGCAGCTTCTTTCTGTAACACAGTACAGGAACTTTACTTGTGCATTGG
TGTTATTGGAGGTCTTGGGCTTGCTTTCAACTTGAACCCAGCTCTGACTATGATTGGCAAGTATTTCTAC
AAGAAGCGACCACTGGCCAACGGACTGGCCATGGCAGGCAGCCCTGTGTTCCTCTCTACCCTGGCTCCAC
TTAATCAGGCTTTCTTTGATATTTTTGACTGGAGAGGAAGCTTCCTAATTCTTGGGGGCCTCCTCCTAAA
TTGTTGTGTAGCTGGATCCCTGATGAGACCAATAGGGCCTGAGCAAGTCAAGCTAGAAAAACTCAAGTCC
AAAGAATCTCTACAGGAAGCTGGAAAATCTGATGCAAATACAGATCTCATTGGAGGAAGTCCCAAAGGAG
AAAAGCTGTCCGTCTTCCAAACAATTAACAAATTCCTGGACTTGTCGCTGTTTACCCATAGGGGCTTTTT
ACTGTACCTGTCTGGAAATGTGGTCATGTTTTTTGGACTCTTTACCCCTTTGGTCTTTCTTAGTAGTTAT
GGTAAGAGTAAGGATTTTTCCAGTGAGAAATCAGCCTTCCTTCTTTCCATTTTGGCTTTTGTTGATATGG
TAGCCAGACCGTCCATGGGACTTGCAGCCAACACCAAGTGGATCAGACCTCGGATCCAGTACTTTTTTGC
TGCTTCTGTTGTTGCAAATGGAGTGTGCCATTTGCTTGCCCCTTTGTCTACAACCTACGTTGGGTTCTGT
GTCTACGCCGGAGTCTTTGGATTTGCCTTTGGTTGGCTCAGCTCTGTATTATTTGAAACATTGATGGACC
TCATTGGACCCCAGAGGTTCTCCAGTGCTGTGGGCTTGGTGACCATTGTGGAATGCTGCCCTGTCCTCCT
AGGGCCACCACTTTTAGGCCGCCTCAATGACATGTATGGAGACTACAAATACACGTACTGGGCTTGTGGC
GTGATCCTCATCATCGCGGGTATCTATCTCTTCATTGGCATGGGCATCAACTATCGACTTCTTGCCAAAG
AACAGAAAGCGGAGGAGAAGCAGAAAAGGGAAGGAAAAGAGGACGAGGCCAGCACCGATGTCGACGAGAA
GCCAAAGGAGACGATGAAAGCTGCACAGTCGCCGCAGCAGCACAGCTCCGGGGACCCCACAGAGGAGGAG
AGCCCTGTCTGA

Translation (493 aa):
MPPAIGGPVGYTPPDGGWGWAVLVGAFISIGFSYAFPKSITVFFKEIEVIFSATTSEVSWISSIMLAVMY
AGGPISSILVNKYGSRPVMIAGGCLSGCGLIAASFCNTVQELYLCIGVIGGLGLAFNLNPALTMIGKYFY
KKRPLANGLAMAGSPVFLSTLAPLNQAFFDIFDWRGSFLILGGLLLNCCVAGSLMRPIGPEQVKLEKLKS
KESLQEAGKSDANTDLIGGSPKGEKLSVFQTINKFLDLSLFTHRGFLLYLSGNVVMFFGLFTPLVFLSSY
GKSKDFSSEKSAFLLSILAFVDMVARPSMGLAANTKWIRPRIQYFFAASVVANGVCHLLAPLSTTYVGFC
VYAGVFGFAFGWLSSVLFETLMDLIGPQRFSSAVGLVTIVECCPVLLGPPLLGRLNDMYGDYKYTYWACG
VILIIAGIYLFIGMGINYRLLAKEQKAEEKQKREGKEDEASTDVDEKPKETMKAAQSPQQHSSGDPTEEE
SPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH