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Report for CCDS17723.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17723.1 Public Mus musculus 3 Cept1 23 108 98 CCDS HistoryNCBI Gene:99712Re-query CCDS DB by CCDS ID:17723.1Re-query CCDS DB by GeneID:99712See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17723.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068301.10 ENSMUSP00000065743.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068301.10Link to Ensembl Protein Viewer:ENSMUSP00000065743.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000068301Re-query CCDS DB by Protein ID:ENSMUSP00000065743
Original member Current member EBI ENSMUST00000121231.7 ENSMUSP00000112509.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121231.7Link to Ensembl Protein Viewer:ENSMUSP00000112509.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121231Re-query CCDS DB by Protein ID:ENSMUSP00000112509
Original member Current member NCBI NM_001357818.1 NP_001344747.1 Accepted alive Link to Nucleotide Sequence:NM_001357818.1Link to Protein Sequence:NP_001344747.1Re-query CCDS DB by Nucleotide ID:NM_001357818Re-query CCDS DB by Protein ID:NP_001344747Link to BLAST:NP_001344747.1
Original member Current member NCBI NM_001357819.1 NP_001344748.1 Accepted alive Link to Nucleotide Sequence:NM_001357819.1Link to Protein Sequence:NP_001344748.1Re-query CCDS DB by Nucleotide ID:NM_001357819Re-query CCDS DB by Protein ID:NP_001344748Link to BLAST:NP_001344748.1
Original member Current member NCBI NM_133869.4 NP_598630.2 Accepted alive Link to Nucleotide Sequence:NM_133869.4Link to Protein Sequence:NP_598630.2Re-query CCDS DB by Nucleotide ID:NM_133869Re-query CCDS DB by Protein ID:NP_598630Link to BLAST:NP_598630.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344747.1 416 Q8BGS7-1 416 100% 0 0
NP_001344748.1 416 Q8BGS7-1 416 100% 0 0
NP_598630.2 416 Q8BGS7-1 416 100% 0 0

Chromosomal Locations for CCDS 17723.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 106503625 106503744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 106504526 106504651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 106505150 106505308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 106505721 106505852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 106512803 106512887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 106531137 106531278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 106533355 106533502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 106539190 106539528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1251 nt):
ATGAGTGGGCATCGGTCAACAAGGAAACGATGTGGAGATTCTCACCCAGAGTCCCCTGTGGGCTTTGGGC
ATATGAGTACTACAGGGTGTGTATTAAATAAATTGTTTCAGTTACCGACACCACCACTGTCAAGACACCA
GTTAAAACGGCTAGAAGAACACAGGTATCAGAGTGCTGGACGGTCCCTTCTCGAGCCCTTAATGCAAGGA
TACTGGGAATGGCTAGTTGGAAGAGTACCCTCATGGATTGCCCCAAATCTCATCACCATCATTGGACTAT
CAATAAATATCTGTACAACTATTTTGTTAGTCTTCTACTGCCCTACAGCTACAGAGCAGGCACCTCTGTG
GGCTTATATTGCCTGTGCTTGTGGCCTTTTCATTTACCAGTCTCTGGATGCCATAGATGGGAAACAGGCC
AGAAGAACTAACAGTAGCTCTCCTCTGGGAGAACTTTTTGATCATGGCTGTGACTCACTATCGACAGTTT
TTGTGGTTCTTGGAACTTGTATTGCAGTACAACTTGGGACAAATCCTGACTGGATGTTTTTTTGTTGTTT
TGCTGGGACATTCATGTTCTATTGTGCACACTGGCAAACATATGTTTCTGGAACATTGCGATTTGGAATA
ATTGATGTGACTGAAGTGCAAATCTTCATAATAATCATGCATTTGCTGGCAGTGATTGGAGGACCACCTT
TTTGGCAATCTATGATTCCTGTGTTGAATATTCAAATGAAACTTCTTCCTGCACTTTGTACTGTGGCAGG
GACCATATTTTCCTGTACAAATTACTTCCGTGTAATCTTCACAGGTGGTGTTGGCAAAAATGGGTCAACC
ATAGCAGGAACAAGTGTCCTTTCTCCTTTTCTGCATATTGGATCAGTGATCACGTTAGCTGTTATGATCT
ACAAGAAATCAGCAGTTCAGCTTTTTGAAAAGCATCCATGTCTTTATATACTGACATTTGGTTTTGTGTC
GGCTAAAATCACTAATAAGCTTGTGGTTGCTCACATGACGAAAAGTGAAATGCATTTGCATGACACAGCA
TTCATAGGTCCAGCACTTCTGTTTCTGGACCAGTATTTTAACAGCTTCATTGATGAATATATAGTACTTT
GGATTGCCTTGATCTTCTCTTTCTTTGATTTGATTCGTTACTGTGTCAGTGTTTGCAATCAGATTGCATC
TCACCTGCATATACATGTCTTCAGAATTAAAGCCTCTACAGCTCACTCTAATCATCACTAA

Translation (416 aa):
MSGHRSTRKRCGDSHPESPVGFGHMSTTGCVLNKLFQLPTPPLSRHQLKRLEEHRYQSAGRSLLEPLMQG
YWEWLVGRVPSWIAPNLITIIGLSINICTTILLVFYCPTATEQAPLWAYIACACGLFIYQSLDAIDGKQA
RRTNSSSPLGELFDHGCDSLSTVFVVLGTCIAVQLGTNPDWMFFCCFAGTFMFYCAHWQTYVSGTLRFGI
IDVTEVQIFIIIMHLLAVIGGPPFWQSMIPVLNIQMKLLPALCTVAGTIFSCTNYFRVIFTGGVGKNGST
IAGTSVLSPFLHIGSVITLAVMIYKKSAVQLFEKHPCLYILTFGFVSAKITNKLVVAHMTKSEMHLHDTA
FIGPALLFLDQYFNSFIDEYIVLWIALIFSFFDLIRYCVSVCNQIASHLHIHVFRIKASTAHSNHH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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