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Report for CCDS17749.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17749.1 Public Mus musculus 3 Ampd2 23 108 98 CCDS HistoryNCBI Gene:109674Re-query CCDS DB by CCDS ID:17749.1Re-query CCDS DB by GeneID:109674See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17749.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102637.7 ENSMUSP00000099697.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102637.7Link to Ensembl Protein Viewer:ENSMUSP00000099697.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102637Re-query CCDS DB by Protein ID:ENSMUSP00000099697
Original member Current member EBI ENSMUST00000102638.7 ENSMUSP00000099698.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102638.7Link to Ensembl Protein Viewer:ENSMUSP00000099698.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102638Re-query CCDS DB by Protein ID:ENSMUSP00000099698
Original member Current member NCBI NM_001289719.1 NP_001276648.1 Accepted alive Link to Nucleotide Sequence:NM_001289719.1Link to Protein Sequence:NP_001276648.1Re-query CCDS DB by Nucleotide ID:NM_001289719Re-query CCDS DB by Protein ID:NP_001276648Link to BLAST:NP_001276648.1
Original member Current member NCBI NM_028779.5 NP_083055.1 Accepted alive Link to Nucleotide Sequence:NM_028779.5Link to Protein Sequence:NP_083055.1Re-query CCDS DB by Nucleotide ID:NM_028779Re-query CCDS DB by Protein ID:NP_083055Link to BLAST:NP_083055.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276648.1 798 Q9DBT5-1 798 100% 0 0
NP_083055.1 798 Q9DBT5-1 798 100% 0 0

Chromosomal Locations for CCDS 17749.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 108074915 108075121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108075249 108075359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108075531 108075704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108075971 108076091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108076358 108076521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108076613 108076739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108077019 108077182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108077332 108077463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108077552 108077746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108078680 108078809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108078987 108079076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108079185 108079326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108079587 108079773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108080063 108080174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108080267 108080335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108080644 108080774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108081001 108081131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108086218 108086227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2397 nt):
ATGGCCTCAGAAGCTCGAAGCGGTCTGGGGGCCTCTCCGCTACAGTCTGCCCGATCCCTGCCAGGCAACG
CCCCTTGCCTCAAGCACTTCCCGCTTGACCTGCGCACGTCTATGGATGGCAAATGCAAGGAGATCGCTGA
GGAGTTGTTCAGCCGCTCACTGGCTGAGAGTGAGCTTCGTAGCGCCCCTTATGAGTTCCCAGAGGAAAGC
CCCATCGAGCAGCTAGAAGAACGGAGGCAGCGGCTGGAGCGCCAGATCAGCCAGGATGTCAAGCTGGAGC
CAGATATTCTTCTTCGAGCCAAGCAAGATTTCCTGAAGACAGACAGCGACTCAGACTTACAGCTGTACAA
GGAGCAAGGAGAGGGACAGGGTGACAGGGGTCTTTGGGAACGTGATGTGGTATTGGAACGGGAATTTCAG
CGGGTCATCATCTCTGGGGAGGAGAAGTGTGGGGTGCCATTCACAGACCTCTTAGACGCAGCCAAAAGTG
TGGTTCGGGCACTTTTCATCCGGGAGAAGTACATGGCCCTATCACTGCAGAGCTTCTGTCCCACCACCCG
CCGTTACCTGCAGCAGCTGGCTGAGAAGCCCCTGGAGACTCGAACTTATGAGCAGAGTCCTGATACCCCT
GTATCTGCTGATGCCCCAGTGCATCCCCCTGCACTGGAGCAGCACCCGTATGAGCACTGTGAGCCAAGCG
CCATGCCTGGGGACCTGGGCTTGGGTCTGCGCATGGTGCGTGGTGTGGTGCACGTCTACACCCGCAGGGA
CCCTGATGAGCACTGTCCGGAGGTGGAGCTTCCATACCCTGACCTACAGGAATTTGTAGCTGACGTCAAT
GTGCTGATGGCCCTGATCATCAATGGTCCCATAAAGTCATTCTGCTACCGCCGGCTGCAGTACCTGAGCT
CCAAATTCCAGATGCACGTTTTGCTCAATGAGATGAAGGAGCTCGCTGCTCAGAAGAAAGTGCCACACCG
GGACTTCTACAATATCCGTAAGGTGGACACACACATCCACGCCTCGTCCTGCATGAACCAGAAACATCTA
CTGCGCTTCATCAAGCGGGCCATGAAGCGGCACCTGGAGGAGATTGTGCATGTGGAACAGGGCCGCGAGC
AGACGCTGAGAGAAGTCTTCGAGAGCATGAACCTCACTGCCTACGACTTAAGTGTGGACACGCTGGATGT
GCATGCGGACAGGAATACCTTTCATCGATTTGACAAATTCAATGCCAAATACAACCCTATTGGGGAGTCT
GTTCTCCGAGAGATCTTCATTAAAACCGACAACAAGATTTCTGGGAAGTACTTTGCTCACATCATCAAGG
AGGTGATGGCAGACTTGGAGGAGAGCAAATACCAGAATGCAGAGCTCCGGCTGTCCATCTACGGGCGTTC
GAGGGATGAGTGGGACAAGCTGGCACGCTGGGCAGTGAACCACAAAGTGCACTCTCCCAATGTCCGCTGG
CTGGTGCAGGTGCCCCGCCTCTTCGATGTGTACCGCACCAAGGGCCAGCTGGCCAACTTCCAAGAGATGC
TGGAGAACATCTTTCTGCCCCTGTTTGAGGCTACTGTGCACCCTGCCAGCCACCCGGAGCTGCACCTCTT
TCTGGAGCACGTGGATGGTTTTGATAGCGTGGATGATGAGTCCAAGCCAGAGAACCACGTCTTCAACCTG
GAGAGTCCCCTCCCAGAAGCTTGGGTGGAGGAGGACAACCCTCCCTATGCCTACTACCTGTACTACACCT
TCGCTAACATGGCTATGTTGAACCATCTGCGCAGGCAGAGAGGTTTCCACACGTTCGTGCTGAGGCCGCA
CTGTGGGGAGGCCGGGCCCATCCACCACCTGGTATCAGCCTTCATGCTGGCCGAGAACATCTCCCACGGG
CTGCTCCTGCGCAAGGCCCCCGTCCTGCAGTACCTGTATTACCTGGCTCAGATCGGCATCGCCATGTCCC
CGCTCAGCAACAACAGCCTGTTCCTCAGCTACCACCGGAACCCTCTCCCTGAGTACTTGTCCCGTGGCCT
CATGGTCTCGCTGTCCACAGATGATCCCTTGCAGTTCCACTTCACCAAGGAGCCCCTGATGGAGGAGTAC
AGCATCGCCACCCAGGTGTGGAAGCTCAGCTCCTGCGATATGTGCGAGCTGGCCCGTAACAGCGTGCTCA
TGAGTGGCTTCTCTCACAAGGTGAAAAGCCACTGGCTGGGACCCAACTATACCAAGGAGGGCCCTGAGGG
CAATGATATCCGCCGTACCAACGTGCCAGACATCCGAGTGGGCTACCGCTATGAGACGCTATGCCAGGAG
CTGGCACTTATCACACAGGCCGTCCAAAGTGAGATGCTGGAGACCATCCCAGAGGAAGTGGGCATTGTCA
TGAGCCCAGGGCCTTAG

Translation (798 aa):
MASEARSGLGASPLQSARSLPGNAPCLKHFPLDLRTSMDGKCKEIAEELFSRSLAESELRSAPYEFPEES
PIEQLEERRQRLERQISQDVKLEPDILLRAKQDFLKTDSDSDLQLYKEQGEGQGDRGLWERDVVLEREFQ
RVIISGEEKCGVPFTDLLDAAKSVVRALFIREKYMALSLQSFCPTTRRYLQQLAEKPLETRTYEQSPDTP
VSADAPVHPPALEQHPYEHCEPSAMPGDLGLGLRMVRGVVHVYTRRDPDEHCPEVELPYPDLQEFVADVN
VLMALIINGPIKSFCYRRLQYLSSKFQMHVLLNEMKELAAQKKVPHRDFYNIRKVDTHIHASSCMNQKHL
LRFIKRAMKRHLEEIVHVEQGREQTLREVFESMNLTAYDLSVDTLDVHADRNTFHRFDKFNAKYNPIGES
VLREIFIKTDNKISGKYFAHIIKEVMADLEESKYQNAELRLSIYGRSRDEWDKLARWAVNHKVHSPNVRW
LVQVPRLFDVYRTKGQLANFQEMLENIFLPLFEATVHPASHPELHLFLEHVDGFDSVDDESKPENHVFNL
ESPLPEAWVEEDNPPYAYYLYYTFANMAMLNHLRRQRGFHTFVLRPHCGEAGPIHHLVSAFMLAENISHG
LLLRKAPVLQYLYYLAQIGIAMSPLSNNSLFLSYHRNPLPEYLSRGLMVSLSTDDPLQFHFTKEPLMEEY
SIATQVWKLSSCDMCELARNSVLMSGFSHKVKSHWLGPNYTKEGPEGNDIRRTNVPDIRVGYRYETLCQE
LALITQAVQSEMLETIPEEVGIVMSPGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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