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Report for CCDS17784.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17784.1 Public Mus musculus 3 Extl2 23 108 98 CCDS HistoryNCBI Gene:58193Re-query CCDS DB by CCDS ID:17784.1Re-query CCDS DB by GeneID:58193See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17784.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029575.11 ENSMUSP00000029575.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029575.11Link to Ensembl Protein Viewer:ENSMUSP00000029575.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000029575Re-query CCDS DB by Protein ID:ENSMUSP00000029575
Original member Current member EBI ENSMUST00000106502.1 ENSMUSP00000102111.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106502.1Link to Ensembl Protein Viewer:ENSMUSP00000102111.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106502Re-query CCDS DB by Protein ID:ENSMUSP00000102111
Original member Current member NCBI NM_001163514.1 NP_001156986.1 Accepted alive Link to Nucleotide Sequence:NM_001163514.1Link to Protein Sequence:NP_001156986.1Re-query CCDS DB by Nucleotide ID:NM_001163514Re-query CCDS DB by Protein ID:NP_001156986Link to BLAST:NP_001156986.1
Original member Current member NCBI NM_021388.4 NP_067363.3 Accepted alive Link to Nucleotide Sequence:NM_021388.4Link to Protein Sequence:NP_067363.3Re-query CCDS DB by Nucleotide ID:NM_021388Re-query CCDS DB by Protein ID:NP_067363Link to BLAST:NP_067363.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156986.1 330 Q9ES89 330 100% 0 0
NP_067363.3 330 Q9ES89 330 100% 0 0

Chromosomal Locations for CCDS 17784.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 116010689 116010696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116024007 116024434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116025325 116025395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116027013 116027498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (993 nt):
ATGATGAGGGGTTGCCACATCTGCAAACTTCCGGGAAGAGTCATGGGGATTCGAGTGCTCCGGTTCTCCC
TGGTGGTCATCCTTGTGTTGCTGCTGGTAGCGGGGGCTTTGACCAACTTACTCCCCAACATCAAAGAAGA
CAAGATGCTCACTCTGCGTAGGGAGATCAAATCCCCGAGCAAGTCGGCCCTGGATTCATTCACCCTCATC
ATGCAGACATACAACAGAACAGACCTCTTACTAAGACTCTTAAATCATTACCAGGCAGTACCGAGTCTGC
ACAAGGTGATCGTGGTGTGGAACAATGTGGGAGAGAAGGGCCCAGAGGAGTTGTGGAATTCTCTAGGGCC
TCACCCGATCCCTGTCATCTTCAAACCACAAACAGCAAACAAAATGAGAAACCGACTCCAGGTCTTCCCT
GAAGTGGAGACCAACGCGGTGTTGATGGTAGACGATGACACACTCATTAGTGCCCAGGACCTTGTTTTCG
CTTTCTCAATTTGGCAGCAATTTCCTGATCAGATCATAGGATTTGTACCTAGAAAGCACGTCTCTACTTC
CTCCGGGATCTACAGTTACGGAGGCTTTGAGCTGCAGACACCGGGGCCCGGGAATGGCGACCAGTACTCC
ATGGTGCTCATCGGAGCCTCCTTCTTCAACAGCAAATACCTGGAACTCTTCCAGAAGCAGCCTGCAGCCG
TCCACGCGCTGATCGATGAGACGCAGAACTGTGACGACATCGCTATGAATTTCCTCGTCACCAGGCACAC
TGGCAAGCCTTCAGGGATATTCGTGAAACCCATAAACATGGTCAACTTGGAAAAAGAAACCAACGGGTAT
TCCGGAATGTGGCACCGGGCGGAGCACTTTCTGCAGAGATCCTACTGTATAAATAAGCTCGTTAACATCT
ACGACGGCATGCCCTTAAAGTACTCCAACATTATGATTTCCCAGTTTGGTTTTCCGTATGCCAACCATAA
AAGTAAAATGTGA

Translation (330 aa):
MMRGCHICKLPGRVMGIRVLRFSLVVILVLLLVAGALTNLLPNIKEDKMLTLRREIKSPSKSALDSFTLI
MQTYNRTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNSLGPHPIPVIFKPQTANKMRNRLQVFP
EVETNAVLMVDDDTLISAQDLVFAFSIWQQFPDQIIGFVPRKHVSTSSGIYSYGGFELQTPGPGNGDQYS
MVLIGASFFNSKYLELFQKQPAAVHALIDETQNCDDIAMNFLVTRHTGKPSGIFVKPINMVNLEKETNGY
SGMWHRAEHFLQRSYCINKLVNIYDGMPLKYSNIMISQFGFPYANHKSKM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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