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Report for CCDS17791.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17791.1 Public Mus musculus 3 Slc35a3 23 108 98 CCDS HistoryNCBI Gene:229782Re-query CCDS DB by CCDS ID:17791.1Re-query CCDS DB by GeneID:229782See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17791.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029569.8 ENSMUSP00000029569.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029569.8Link to Ensembl Protein Viewer:ENSMUSP00000029569.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000029569Re-query CCDS DB by Protein ID:ENSMUSP00000029569
Original member Current member EBI ENSMUST00000120120.7 ENSMUSP00000112674.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120120.7Link to Ensembl Protein Viewer:ENSMUSP00000112674.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120120Re-query CCDS DB by Protein ID:ENSMUSP00000112674
Original member NCBI NM_001362374.1 NP_001349303.1 Updated not alive Link to Nucleotide Sequence:NM_001362374.1Link to Protein Sequence:NP_001349303.1Re-query CCDS DB by Nucleotide ID:NM_001362374Re-query CCDS DB by Protein ID:NP_001349303
Current member NCBI NM_001362374.2 NP_001349303.1 Accepted alive Link to Nucleotide Sequence:NM_001362374.2Link to Protein Sequence:NP_001349303.1Re-query CCDS DB by Nucleotide ID:NM_001362374Re-query CCDS DB by Protein ID:NP_001349303Link to BLAST:NP_001349303.1
Original member NCBI NM_144902.4 NP_659151.1 Updated not alive Link to Nucleotide Sequence:NM_144902.4Link to Protein Sequence:NP_659151.1Re-query CCDS DB by Nucleotide ID:NM_144902Re-query CCDS DB by Protein ID:NP_659151
Current member NCBI NM_144902.5 NP_659151.1 Accepted alive Link to Nucleotide Sequence:NM_144902.5Link to Protein Sequence:NP_659151.1Re-query CCDS DB by Nucleotide ID:NM_144902Re-query CCDS DB by Protein ID:NP_659151Link to BLAST:NP_659151.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349303.1 326 Q8R1T4 326 100% 0 0
NP_659151.1 326 Q8R1T4 326 100% 0 0

Chromosomal Locations for CCDS 17791.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 116673628 116673718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116675171 116675304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116677863 116677981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116681105 116681276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116687062 116687184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116687271 116687425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116694430 116694616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (981 nt):
ATGTCTGCCAACCTAAAATATCTTTCCTTGGGAATTTTGGTGTTTCAGACTACCAGTCTGGTTCTAACGA
TGCGGTATTCTAGGACTTTAAAAGAGGAGGGGCCTCGTTATCTGTCTTCTACAGCAGTGGTTGTGGCTGA
ATTTTTGAAGATAATGGCCTGCATCTTTTTAGTCTACAAAGACAGTAAGTGTAGTGTGAGAGCACTGAAT
AGAGTACTGCATGATGAAATTCTTAATAAGCCCATGGAAACCCTGAAGCTCGCTATCCCGTCAGGGATAT
ATACTCTTCAGAACAACTTACTCTATGTGGCACTGTCAAACCTAGATGCAGCCACTTACCAGGTTACATA
TCAGTTGAAAATACTTACAACAGCATTATTTTCTGTGTCTATGCTTGGTAAAAAATTAGGTGTGTACCAG
TGGCTCTCCCTAGTAATTCTGATGGCAGGAGTTGCTTTTGTACAGTGGCCTTCAGATTCTCAAGAGCTGA
ACTCTAAGGACCTTTCAACAGGCTCACAGTTTGTAGGCCTCATGGCAGTTCTCACAGCCTGTTTTTCAAG
TGGCTTTGCTGGAGTTTATTTTGAGAAAATCTTAAAAGAAACAAAACAGTCAGTATGGATAAGGAACATT
CAACTTGGTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACGTTTATGATGGAGAATTGGTCTCAA
AGAATGGATTTTTTCAGGGATATAATCAACTGACGTGGATAGTTGTTGCTCTGCAGGCACTTGGAGGCCT
TGTAATAGCTGCTGTCATCAAATATGCAGATAACATTTTAAAAGGATTTGCGACCTCCTTATCCATAATA
TTGTCAACAATAATATCTTATTTTTGGTTGCAAGATTTTGTGCCAACCAGTGTCTTTTTCCTTGGAGCCA
TCCTTGTAATAGCAGCTACTTTCTTGTACGGTTACGATCCCAAACCTGCAGGAAATCCCACTAAAGCATA
G

Translation (326 aa):
MSANLKYLSLGILVFQTTSLVLTMRYSRTLKEEGPRYLSSTAVVVAEFLKIMACIFLVYKDSKCSVRALN
RVLHDEILNKPMETLKLAIPSGIYTLQNNLLYVALSNLDAATYQVTYQLKILTTALFSVSMLGKKLGVYQ
WLSLVILMAGVAFVQWPSDSQELNSKDLSTGSQFVGLMAVLTACFSSGFAGVYFEKILKETKQSVWIRNI
QLGFFGSIFGLMGVYVYDGELVSKNGFFQGYNQLTWIVVALQALGGLVIAAVIKYADNILKGFATSLSII
LSTIISYFWLQDFVPTSVFFLGAILVIAATFLYGYDPKPAGNPTKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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