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Report for CCDS17818.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17818.1 Public Mus musculus 3 Ndst3 23 108 98 CCDS HistoryNCBI Gene:83398Re-query CCDS DB by CCDS ID:17818.1Re-query CCDS DB by GeneID:83398See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17818.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029602.12 ENSMUSP00000029602.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029602.12Link to Ensembl Protein Viewer:ENSMUSP00000029602.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000029602Re-query CCDS DB by Protein ID:ENSMUSP00000029602
Original member Current member EBI ENSMUST00000154668.7 ENSMUSP00000118207.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000154668.7Link to Ensembl Protein Viewer:ENSMUSP00000118207.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000154668Re-query CCDS DB by Protein ID:ENSMUSP00000118207
Original member Current member EBI ENSMUST00000172537.2 ENSMUSP00000133657.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172537.2Link to Ensembl Protein Viewer:ENSMUSP00000133657.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000172537Re-query CCDS DB by Protein ID:ENSMUSP00000133657
Original member NCBI NM_031186.3 NP_112463.2 Updated not alive Link to Nucleotide Sequence:NM_031186.3Link to Protein Sequence:NP_112463.2Re-query CCDS DB by Nucleotide ID:NM_031186Re-query CCDS DB by Protein ID:NP_112463
Current member NCBI NM_031186.4 NP_112463.2 Accepted alive Link to Nucleotide Sequence:NM_031186.4Link to Protein Sequence:NP_112463.2Re-query CCDS DB by Nucleotide ID:NM_031186Re-query CCDS DB by Protein ID:NP_112463Link to BLAST:NP_112463.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112463.2 873 Q9EQH7-1 873 99.8855% 0 1

Chromosomal Locations for CCDS 17818.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 123528811 123528930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123531084 123531186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123546769 123546878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123548872 123549042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123552506 123552680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123556792 123556915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123560200 123560296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123561902 123562084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123601441 123601569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123606846 123607031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123627959 123628113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123634253 123634340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123671341 123672321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2622 nt):
ATGAGTTTTATCATGAAACCTCACAGACACTTTCAGAGAACACTGATTCTGCTTGCCACCTTTTGTATGG
TAAGCATTATTATTTCTGCTTACTACCTGTACAGCGGCTACAAACAGGAAAGTGAAGTCTCCGGGCGGGC
TTCGGAAGTGGACTGTGGTGACCTCCAGCACATACCATCCAGGCTGATGGAAGTGAGGAGGACAATGATT
TCCGATGCTTCAAGGACAGACCCCACAGTCCTGGTGTTTGTGGAGAGCCAGTACTCATCCCTTGGTCAAG
ACATCATTATGATGCTAGAATCCATCCGGTTCCATTATCACACTGAAATCGCTCCTGGAAAAGGAGATCT
TCCGGCACTTACAGACAATGTGAAGGGCAAATATGTTCTCATTATATATGAGAATATTCTAAAGTATATA
AACATGGACTCTTGGAATAGAAGCCTTTTAGATAAATACTGTATAGAGTATGGTGTGGGTATCATTGGAT
TCCATAAAACCAGTGAGAAAAATCTACAGAGCTTTCAGTTCAGGGGCTTCCCCTTTTCCATAAGTGGAAA
CCTGGCAGTAAAAGATTGCTGTATTAATCCTCACTCCCCACTCCTTCGTGTGACCAAATCATCCAAGCTG
GACAGAGGTTCTCTACCTGGAACTGACTGGACAGTTTTTCAGATTAACCACTCCACCTACCAGCCAGTAA
TATTTGCCAAAGTTAAGACTCCAGAAAACCTTTCTCCTCCCATCTCTAAACATGCATTTTATGCCACTAT
CATACACGACCTGGGGCTTCATGACGGGATCCAGCGAGTTCTTTTTGGCAACAACTTGAACTTCTGGCTA
CACAAGCTCATCTTCATAGACGCCATCTCCTTCTTGTCGGGGAAGAGGCTGACACTGTCCTTGGACAGGT
ACATCCTTGTGGACATTGACGACATATTTGTAGGGAAGGAGGGCACAAGGATGAACACCAATGATGTGAA
GGCCCTGCTTGACACTCAGAATCTTTTGCGCACACAAATCACAAATTTTACATTCAACCTTGGATTTTCA
GGGAAATTTTATCACACAGGAACTGAAGAGGAAGATGAAGGGGATGATTGTCTGCTGGGTTCTGTGGACG
AGTTCTGGTGGTTTCCTCACATGTGGAGTCACATGCAGCCCCACCTCTTCCACAATGAGTCGTCTTTAAT
AGAGCAGATGATTCTCAACAAAAAGTTTGCCTTAGAGCACGGCATCCCTACCGATATGGGATATGCAGTG
TCCCCTCACCATTCAGGTGTCTACCCTGTCCATGTTCAGCTTTATGAGGCCTGGAAGAAGGTTTGGAATA
TTAAAATCACCAGCACTGAAGAATATCCACATCTGAAACCAGCTAGATATCGGAGAGGCTTCATTCACAA
AAACATCATGGTTCTCCCAAGACAAACCTGTGGGCTCTTCACCCACACAATTTTCTACAAGGAGTATCCA
GGGGGTCCCAGGGAACTGGACAAGAGTATTCATGGAGGGGAGCTCTTCTTCACTGTGGTTCTCAACCCAA
TCAGTATTTTCATGACCCATTTGTCTAACTATGGAAACGACCGACTGGGATTATATACATTTGTGAATCT
AGCCAATTTTGTGCAGACCTGGACCAACCTGCGTCTTCAGACCTTGCCTCCAGCTCAGCTGGCTCACAAG
TATTTTGAGCTCTTTCCTGATCAGAAAGACCCTCTCTGGCAGAACCCCTGTGATGACAAACGCCACAGAG
ACATTTGGTCTAAAGAGAAAACCTGCGATCGTTTACCAAAATTCTTGGTAATAGGACCCCAGAAAACTGG
TACCACTGCCTTGTGTCTGTTCCTGATTATGCATCCTTCCATCCTTAGTAACTCCCCCAGCCCAAAATCC
TTTGAGGAGGTACAGTTCTTTAATAGAAATAACTACCACAGGGGGATTGATTGGTACATGGATTTCTTCC
CAGTCCCATCTAATGTCACCACTGACTTTCTGTTTGAGAAGAGTGCTAATTACTTCCATTCAGAGGACGC
TCCCAAGAGGGCTGCTTCTCTAGTCCCGAAAGCCAAAATCATCACCATACTCATTGACCCGTCAGACCGA
GCGTACTCCTGGTATCAGCATCAGCGATCCCATGAAGACCCTGCAGCTCTGAAATTTAGCTTCTATGAAG
TGATCTCTGCTGGGCCCAATGCACCCTGGGAACTCCGAACCCTGCAGAAGAGATGCCTGGTCCCTGGGTG
GTATGCCAACCACATCGAGAGATGGCTTGTTTATTTCCCTCCATTTCAGTTGCTAATCATTGATGGACAG
CAGCTAAGAACTACCCCTGCGACAGTGATGGATGAAGTCCAGAAGTTTCTAGGAGTCTCACCTCATTATA
ATTACTCCGAAGCTTTAACGTTTGATTCTCATAAAGGCTTCTGGTGTCAGCTGCTGGAAGAAGGGAAAAC
AAAATGCCTTGGGAAGAGTAAAGGAAGAAAATACCCCCCGATGGACTCTGATAGCAGAGCGTTTCTGTCC
AGCTACTACCGCGACCACAACGTGGAGCTCTCGAAGCTGCTGCACAGGCTGGGGCAGCCTCTGCCCTCCT
GGCTGAGACAGGAGCTGCAGAAAGTGAGGTAG

Translation (873 aa):
MSFIMKPHRHFQRTLILLATFCMVSIIISAYYLYSGYKQESEVSGRASEVDCGDLQHIPSRLMEVRRTMI
SDASRTDPTVLVFVESQYSSLGQDIIMMLESIRFHYHTEIAPGKGDLPALTDNVKGKYVLIIYENILKYI
NMDSWNRSLLDKYCIEYGVGIIGFHKTSEKNLQSFQFRGFPFSISGNLAVKDCCINPHSPLLRVTKSSKL
DRGSLPGTDWTVFQINHSTYQPVIFAKVKTPENLSPPISKHAFYATIIHDLGLHDGIQRVLFGNNLNFWL
HKLIFIDAISFLSGKRLTLSLDRYILVDIDDIFVGKEGTRMNTNDVKALLDTQNLLRTQITNFTFNLGFS
GKFYHTGTEEEDEGDDCLLGSVDEFWWFPHMWSHMQPHLFHNESSLIEQMILNKKFALEHGIPTDMGYAV
SPHHSGVYPVHVQLYEAWKKVWNIKITSTEEYPHLKPARYRRGFIHKNIMVLPRQTCGLFTHTIFYKEYP
GGPRELDKSIHGGELFFTVVLNPISIFMTHLSNYGNDRLGLYTFVNLANFVQTWTNLRLQTLPPAQLAHK
YFELFPDQKDPLWQNPCDDKRHRDIWSKEKTCDRLPKFLVIGPQKTGTTALCLFLIMHPSILSNSPSPKS
FEEVQFFNRNNYHRGIDWYMDFFPVPSNVTTDFLFEKSANYFHSEDAPKRAASLVPKAKIITILIDPSDR
AYSWYQHQRSHEDPAALKFSFYEVISAGPNAPWELRTLQKRCLVPGWYANHIERWLVYFPPFQLLIIDGQ
QLRTTPATVMDEVQKFLGVSPHYNYSEALTFDSHKGFWCQLLEEGKTKCLGKSKGRKYPPMDSDSRAFLS
SYYRDHNVELSKLLHRLGQPLPSWLRQELQKVR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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