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Report for CCDS17857.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17857.1 Public Mus musculus 3 Manba 23 108 98 CCDS HistoryNCBI Gene:110173Re-query CCDS DB by CCDS ID:17857.1Re-query CCDS DB by GeneID:110173See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17857.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029814.9 ENSMUSP00000029814.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029814.9Link to Ensembl Protein Viewer:ENSMUSP00000029814.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000029814Re-query CCDS DB by Protein ID:ENSMUSP00000029814
Original member Current member NCBI NM_027288.3 NP_081564.3 Accepted alive Link to Nucleotide Sequence:NM_027288.3Link to Protein Sequence:NP_081564.3Re-query CCDS DB by Nucleotide ID:NM_027288Re-query CCDS DB by Protein ID:NP_081564Link to BLAST:NP_081564.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081564.3 879 Q8K2I4 879 99.6587% 0 3

Chromosomal Locations for CCDS 17857.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 135485681 135485857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135506909 135507003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135510975 135511080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135511803 135511973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135517903 135518026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135522992 135523167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135524517 135524627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135542312 135542463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135544726 135544843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135547550 135547636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135549200 135549367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135551063 135551281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135554760 135554924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135563205 135563349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135566488 135566630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135567464 135567721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135570215 135570439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2640 nt):
ATGCATCTTCACCTGCTCTTGATATTGGCGCTATTTCGGGCCGGCTGCGTGGTGGCAGGTCCTAGCTACA
GC
CTGAGCGGGAGCTGGCGGGTGAGCAACGGGAATGGCTCCCTGGAGCTACCGGCGACTGTCCCCGGCTA
T
GTGCACAGCGCCCTGCACCAGCACGGGCTGATCCAGGATCCTTACTACAGATTTAATGACCTGAACTAT
AGA
TGGATTTCCTTAGATAACTGGACCTACAGCACGGAATTTAAAATCCCCTTTAATCTCAGTGAATGGC
AG
AAGGTAAAGTTGATCTTTGATGGAGTTGACACGGTTGCAGAAATCCTGTTCAACAATGTCACCATTGG
G
AAGACAGACAACATGTTCACTGGATACAGCTTTGACGTCACCAACGTAGTCAAAGACGTGAACTCCTTA
AAG
CTGCAGTTCCGGTCAGCAGTGCAGTATGCAGAGTGTCAGAGCAAGGCTCACACTAGCTACCGGGTGC
CC
CCAGAGTGCCCCCCGGTGGAGCAGAAGGGTGAATGTCACGTCAACTTCATCCGAAAGGCACAGTGTTC
C
TTCAGCTGGGACTGGGGCCCTTCCTTCCCCTCTCAGGGAATCTGGAAAGATGTTAGAATCGAAGCCTAT
AAC
ATTGCTCATCTGGATTACCTCACGTTTTTGCCAGTATATGATAACGCTTCTCAGGCCTGGAATATTG
AA
ATAGAGGCTTCTTTTGATGTCGCCAGCTCGAAGTCCGTTAGTGGTCAGGTGACAGTAGCCATCCCTCA
A
CTGAAAACACAGCAGACAAACGACATTGAACTTCAACAAGAGCAAAGGATTGTTAAACTACTGGTCAAA
ATT
AGGAAGGACGTTGCTGTGGAGACCTGGTGGCCTCGTGGACATGGGAACCAGACTGGGTACAACATGA
CA
ATTCTCTTTGCTCTGGATGGAGGCTTAAAAATTGAGAAAGCAGCCAAGGTTTATTTCAGGACAGTGCA
A
CTGATAGAAGAGGGCATAAAAGGGTCTCCTGGTCTGAGTTTCTACTTCAAAATTAATGGGCTTCCTATA
TTT
CTGAAAGGCTCAAATTGGATTCCAGCCGACTCCTTCCAAGACAAAGTCACTTCCGATCGGCTGCAGC
TC
CTTTTCCAGTCCGTCGTGGATGCGAACATGAACACTCTGCGCGTGTGGGGGGGTGGCATCTACGAGCA
G
GATGAGTTCTATGCGCTCTGTGATGAACTTGGGATAATGGTGTGGCAGGACTTTATGTTTGCCAGTGCC
CTT
TATCCAACTGAGCCTGGCTTCTTAGCCTCCGTGAGGAAAGAAGTCACCTACCAGGTCAGGAGACTGA
AA
TCTCACCCCTCCATCATCATATGGAGTGGTAATAATGAGAATGAAGTGGCTCTCAGCGTGAACTGGTT
C
CACGTAAATCCCAGGGACATGAAAACGTACATTGACGACTACGTGACCCTCTATGTGAAGAACATCAGG
AAG
ATTGTCTTATCAGAAGACAAGAGCCGTCCTTTCATTGCATCCAGCCCAACCAACGGGATGAAAACCA
TG
GAGGAAGGCTGGATCTCTTACGACCCTTATAGCATCCAGTATGGTGATATTCATTTTTATAACTATGC
C
GATGACTGCTGGAATTGGAAGATCTTCCCAAAAGCTCGATTAGTGTCTGAATATGGCTACCAGTCCTGG
CCT
TCTTTTAGCACACTAGAAAAGGTCTCATCTCAGGAGGACTGGGCTTACAACAGCCGCTTCTCCCTTC
AT
CGGCAGCATCATGAAGATGGCAACCATCAGATGCTGCACCAGGTCAAGATGCATTTCAAACTCCCCCA
G
GGGACAGACCCATTGCGCACATTTAAAGACACTATCTACCTTACTCAGGTGATGCAAGCCCAGTGCATC
AAA
ACAGAAACCGAGTTCTACCTGCGCAGCCGCAGCGAGATAGTGGACGGAAAAGGCCACACCATGGGGG
CA
CTGTACTGGCAGCTGAACGATATCTGGCAGGCTCCTTCCTGGGCCTCTCTTGAGTACGGAGGGAAATG
G
AAAATGCTGCATTACTTCGCTCGGCGTTTCTTCGCTCCACTGTTGCCAGTGGGATTTGAAGATGAAGGT
GTT
TTTTACGTCTATGGCGTCTCAGATCTTCACAAAGACCACCACACGCAGCTCACCGTGAGGCTCCATC
AC
TGGAGCTCCCCGAAGCCTTTGTGCTCCCTCGTGAATTCAAGTATTGTGGTTAAGGCCGGAGAGGCAGT
G
GTTCTGTTCCAGATGCCGGTGTCTGAGCTGCTGAAGAGATGCAGGGGATGCACGAGGGAGACATGCGTG
GTC
TCCTTTTACTTTTCAACTGACAAAGAACTCTTCAGCCCAACCAACTACCACTTCCTGTCCTCCCTGA
AG
GACGCTAAAGGGCTGCTCGAGGCCAACATCACTGTCAACATCTCTCAGAAGGGCAATGTTTTTGTTTT
T
GATCTGGAAACGTCTGCGGTCGCTCCCTTTGTTTGGTTGGATGTAGGAAGTATCCCCGGGAGATTTAGT
GAT
AACGGCTTCCTCATGATTCGGAAGAAACTCTCGGTACTGTTTTACCCTTGGAAGCCCACCAGCAAGA
GT
GAGCTGCAGCAGGCCTTCAGCGTCACCTCCCTGACGGATACCTACTGA


Translation (879 aa):
MHLHLLLILALFRAGCVVAGPSYSLSGSWRVSNGNGSLELPATVPGYVHSALHQHGLIQDPYYRFNDLNY
R
WISLDNWTYSTEFKIPFNL
SEWQKVKLIFDGVDTVAEILFNNVTIGKTDNMFTGYSFDVTNVVKDVNSL
K
LQFRSAVQYAECQSKAHTSYRVPPECPPVEQKGECHVNFIRK
AQCSFSWDWGPSFPSQGIWKDVRIEAY
N
IAHLDYLTFLPVY
DNASQAWNIEIEASFDVASSKSVSGQVTVAIPQLKTQQTNDIELQQEQRIVKLLVK
I
RK
DVAVETWWPRGHGNQTGYNMTILFALDGGLKIEKAAKVYFRTVQLIEEGIKGSPGLSFYFKINGLPI
F
LKGSNWIPADSFQDKVTSD
RLQLLFQSVVDANMNTLRVWGGGIYEQDEFYALCDELGIMVWQDFMFASA
L
YPTEPGFLASVRKEVTYQ
VRRLKSHPSIIIWSGNNENEVALSVNWFHVNPRDMKTYIDDYVTLYVKNIR
K
IVLS
EDKSRPFIASSPTNGMKTMEEGWISYDPYSIQYGDIHFYNYADDCWNWKIFPKARLVSEYGYQSW
P
SFSTLEK
VSSQEDWAYNSRFSLHRQHHEDGNHQMLHQVKMHFKLPQGTDPLRTFKDTIYLTQVMQAQCI
K
TETEFYLRSRSEIVDGKGHTMGALYWQLNDIWQAPSWASL
EYGGKWKMLHYFARRFFAPLLPVGFEDEG
V
FYVYGVSDLHKDHHTQLT
VRLHHWSSPKPLCSLVNSSIVVKAGEAVVLFQMPVSELLKRCRGCTRETCV
V
SFYFSTDKELFSPTNYHFLSSLKDAKGLLEANIT
VNISQKGNVFVFDLETSAVAPFVWLDVGSIPGRFS
D
NGFLMIRKKLSVLFYPWKPTSKSELQQAFSVTSLTDTY




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser