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Report for CCDS17883.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17883.1 Public Mus musculus 3 Hs2st1 23 108 98 CCDS HistoryNCBI Gene:23908Re-query CCDS DB by CCDS ID:17883.1Re-query CCDS DB by GeneID:23908See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17883.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043325.8 ENSMUSP00000043066.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043325.8Link to Ensembl Protein Viewer:ENSMUSP00000043066.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000043325Re-query CCDS DB by Protein ID:ENSMUSP00000043066
Original member Current member NCBI NM_011828.4 NP_035958.3 Accepted alive Link to Nucleotide Sequence:NM_011828.4Link to Protein Sequence:NP_035958.3Re-query CCDS DB by Nucleotide ID:NM_011828Re-query CCDS DB by Protein ID:NP_035958Link to BLAST:NP_035958.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035958.3 356 Q8R3H7 356 100% 0 0

Chromosomal Locations for CCDS 17883.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 144434488 144434714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144435462 144435619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144437595 144437692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144447270 144447408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144453952 144454037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144465047 144465285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144569734 144569857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1071 nt):
ATGGGGCTCCTCAGGATTATGATGCCGCCCAAGTTGCAGCTGCTGGCGGTGGTGGCCTTCGCGGTGGCGA
TGCTCTTCTTGGAGAACCAGATCCAGAAGCTGGAGGAGTCCCGGGCGAAGCTAGAAAGGGCAATTGCAAG
GCACGAAGTCCGAGAAATTGAACAGCGCCATACAATGGATGGCCCTCGGCAGGATGCAACTCTGGATGAA
GAAGAAGACATAATCATCATTTATAACAGAGTGCCCAAAACTGCAAGCACCTCGTTCACCAATATAGCCT
ACGACCTGTGTGCAAAGAATAGATACCATGTTCTTCACATCAACACTACCAAAAATAACCCAGTAATGTC
ATTGCAAGATCAGGTGCGCTTTGTGAAGAACATAACCACCTGGAACGAGATGAAGCCAGGCTTCTATCAC
GGACACATCTCTTACTTGGATTTTGCAAAATTCGGTGTGAAGAAGAAACCAATTTATATCAATGTCATCA
GGGACCCTATTGAGAGGCTAGTTTCCTACTATTACTTCCTGAGGTTTGGAGATGATTACAGACCAGGATT
AAGGAGACGGAAACAAGGAGACAAAAAGACCTTCGATGAATGTGTGGCTGAGGGCGGCTCCGACTGTGCT
CCAGAGAAGCTCTGGCTTCAGATCCCGTTCTTCTGTGGCCACAGCTCAGAATGCTGGAATGTAGGGAGCA
GATGGGCCATGGACCAGGCTAAGTCTAACCTCATTAATGAGTACTTCCTGGTGGGAGTCACCGAGGAGCT
CGAGGACTTCATCATGCTGCTCGAGGCAGCTTTGCCCCGATTCTTCCGGGGCGCTACCGACCTCTACCGT
ACAGGAAAGAAATCTCACCTTAGGAAAACCACAGAGAAGAAGCTGCCCACCAAGCAGACTATCGCGAAGC
TGCAGCAGTCTGACATTTGGAAGATGGAGAATGAGTTCTATGAGTTTGCTCTGGAGCAGTTCCAGTTCAT
CCGAGCTCACGCTGTCCGCGAGAAAGACGGAGACCTCTACATCCTGGCCCAGAACTTTTTCTACGAAAAG
ATTTACCCTAAGTCGAACTGA

Translation (356 aa):
MGLLRIMMPPKLQLLAVVAFAVAMLFLENQIQKLEESRAKLERAIARHEVREIEQRHTMDGPRQDATLDE
EEDIIIIYNRVPKTASTSFTNIAYDLCAKNRYHVLHINTTKNNPVMSLQDQVRFVKNITTWNEMKPGFYH
GHISYLDFAKFGVKKKPIYINVIRDPIERLVSYYYFLRFGDDYRPGLRRRKQGDKKTFDECVAEGGSDCA
PEKLWLQIPFFCGHSSECWNVGSRWAMDQAKSNLINEYFLVGVTEELEDFIMLLEAALPRFFRGATDLYR
TGKKSHLRKTTEKKLPTKQTIAKLQQSDIWKMENEFYEFALEQFQFIRAHAVREKDGDLYILAQNFFYEK
IYPKSN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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