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Report for CCDS17944.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17944.1 Public Mus musculus 4 Sdr16c5 23 108 98 CCDS HistoryNCBI Gene:242285Re-query CCDS DB by CCDS ID:17944.1Re-query CCDS DB by GeneID:242285See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17944.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040925.3 ENSMUSP00000046298.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040925.3Link to Ensembl Protein Viewer:ENSMUSP00000046298.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000040925Re-query CCDS DB by Protein ID:ENSMUSP00000046298
Original member Current member NCBI NM_181989.1 NP_871789.1 Accepted alive Link to Nucleotide Sequence:NM_181989.1Link to Protein Sequence:NP_871789.1Re-query CCDS DB by Nucleotide ID:NM_181989Re-query CCDS DB by Protein ID:NP_871789Link to BLAST:NP_871789.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_871789.1 309 Q7TQA3 309 100% 0 0

Chromosomal Locations for CCDS 17944.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 3996162 3996255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 4005497 4005622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 4006581 4006725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 4010308 4010407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 4012325 4012456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 4016092 4016424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGTCTCAAAACCTGGAATCAGTGAAGAACTTGCTTGTTTTCTTGGGAAAATCACTGTTGAGTGTTTTGG
AGGCCCTACTTTTTCATGTCATCTCAAAACCACGGAAGAACGTTGCCGGTGAGATAGTGCTCATAACAGG
TGCTGGGAGTGGACTAGGAAGGCTCTTAGCATTGCAGTTTGCCCGCCTGGGAGCAGTGCTTGTTCTCTGG
GATGTGAACAAGGAGGCAAATGATGAGACTCATCAGTTAGCTCGGGAAGCAGGAGCTGCCAGAGTACATG
CCTACACCTGTGACTGCAGCCGGAGGGAAGAAGTGTACAGAGTGGCTGACCAGGTTAAGAAAGAAGTTGG
TGATGTCTCTATCCTCATCAACAATGCCGGCATTGTAACAGGCAGAAATTTCCTTGACTGCCCAGATGAC
CTCATGGAAAAGTCATTTGATGTCAATTTCAAAGCACATTTATGGATGTATAAAGCCTTCCTGCCTGCCA
TGATTGCTAACAACCACGGCCATTTGGTTTGCATTTCAAGTTCAGCTGGATTAATTGGAGTAAATGGGCT
GTCAGACTATTGTGCAAGTAAATTCGCAGCCCTTGGATTTGCAGAATCTATGTTTATCGAAACACTTGCC
AAGAAACAATGGGGGATCAAAACGACAATTGTGTGCCCATTCTTTATAAAAACTGGAATGTTTGAAGGTT
GCACTACTAAGTGTCCTACTCTGTTACCAATTCTGGATCCAGAATATGCAGTTAGGAAAATCATAGATGC
CATTCTCCAGGAGCAGCTCTACTTGTATATGCCCAAGTTTTTATACTTCATAGTGTTTCTAAAAAGCATC
TTGCCAATCAAGACAGGAATACTTATAGCTGACTACCTGGGAGTCTTTCATATGACAGAGGGCTTCACTG
GCCAAAAGAAGAAAACTTAA

Translation (309 aa):
MSQNLESVKNLLVFLGKSLLSVLEALLFHVISKPRKNVAGEIVLITGAGSGLGRLLALQFARLGAVLVLW
DVNKEANDETHQLAREAGAARVHAYTCDCSRREEVYRVADQVKKEVGDVSILINNAGIVTGRNFLDCPDD
LMEKSFDVNFKAHLWMYKAFLPAMIANNHGHLVCISSSAGLIGVNGLSDYCASKFAALGFAESMFIETLA
KKQWGIKTTIVCPFFIKTGMFEGCTTKCPTLLPILDPEYAVRKIIDAILQEQLYLYMPKFLYFIVFLKSI
LPIKTGILIADYLGVFHMTEGFTGQKKKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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