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Report for CCDS17979.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17979.1 Public Mus musculus 4 Slc26a7 23 108 98 CCDS HistoryNCBI Gene:208890Re-query CCDS DB by CCDS ID:17979.1Re-query CCDS DB by GeneID:208890See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17979.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042221.13 ENSMUSP00000041789.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042221.13Link to Ensembl Protein Viewer:ENSMUSP00000041789.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000042221Re-query CCDS DB by Protein ID:ENSMUSP00000041789
Original member Current member NCBI NM_145947.2 NP_666059.2 Accepted alive Link to Nucleotide Sequence:NM_145947.2Link to Protein Sequence:NP_666059.2Re-query CCDS DB by Nucleotide ID:NM_145947Re-query CCDS DB by Protein ID:NP_666059Link to BLAST:NP_666059.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666059.2 656 Q8R2Z3 656 100% 0 0

Chromosomal Locations for CCDS 17979.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 14505467 14505502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 14506413 14506516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 14506603 14506657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 14510147 14510247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 14516153 14516201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 14519393 14519530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 14522831 14522897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 14524462 14524568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 14532559 14532654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 14533604 14533681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 14544162 14544275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 14546302 14546449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 14548410 14548492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 14552361 14552513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 14565440 14565604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 14590313 14590485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 14593810 14593920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 14621192 14621384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1971 nt):
ATGACGGGAGCAAAGAGGAAAAAGAGAAGCGTGCTGTGGGGCAAGATGCACACCCCCCACCGAGAAGACA
TTAAGCAGTGGTGTAAGAGGCGCCTACCTATCTTGGAATGGGCACCGCAGTACAATCTGAAGGAAAACCT
GCTTCCAGACACTGTGTCTGGGATAATGTTGGCAGTTCAACAGGTGGCACAAGGGCTGTCCTTCGCTATG
CTTTCATCTGTACACCCAGTTTTTGGTTTATATGGATCTCTGTTTCCAGCCATCATTTATGCTATATTTG
GAATGGGACGCCATGTTGCCACAGGCACCTTTGCCTTGACATCCTTGATATCAGCCAACGCTGTGGAACG
ACTGGTCCCTCAGAGCAGCAGGAACCTCACCACACAGAGCAACTCAAGTGTGTTGGGCTTATCCGAGTTT
GAGCTGCAGAGAATCGGGGTTGCAGCAGCTGTTTCTTTCTTGGGTGGAGTGATTCAGCTGGTCATGTTTG
TGCTGCAGCTGGGCAGTGCCACATTCCTGCTTACAGAGCCTGTGATCAGCGCCATGACCACAGGGGCCGC
CACCCATGTCGTGACATCACAAGTCAAGTATCTCTTGGGAATCAAAATGCCATATATATCCGGACCACTG
GGATTCTTTTATATTTATGCGTATGTCTTTGAGAACATCAAGTCTGTCCAGCTGGAAGCACTGCTCTTTT
CTTTGCTGAGCATCATTGTCCTTGTTCTCGTTAAAGAGCTGAATGAACAGTTTAAAAGAAAAATTAAAGT
TGTTCTTCCTGTCGACTTAGTTTTGATCATTGCCGCCTCATTTGCTTGCTATTGTACCAACATGGAAAAC
ACATACGGATTAGAAGTAGTTGGGCACATTCCAAACGGGATTCCTCCTCCCCGTGCTCCCCCAATGAACA
TCCTCTCTGCAGTGCTCACTGAAGCTTTCGGAGTTGCACTTGTAGGCTATGTGGCCTCGCTGGCTCTCGC
ACAAGGATCTGCCAAGAAGTTCAAATATTCAGTTGATGACAACCAGGAATTTTTGGCCCATGGCCTCAGC
AACGTGATCCCTTCATTTCTCTTCTGCATCCCAAGCGCTGCCGCCATGGGAAGGACGGCTGGTTTGTACA
GCACCGGCGCAAAGACGCAGGTGGCTTGTCTAATATCTTGCATTTTCGTCCTTATTGTCATCTATGCAAT
AGGACCTCTGCTGTACTGGCTGCCCATGTGCGTTCTTGCAAGTATTATTGTTGTGGGCCTGAAGGGAATG
TTAATACAGTTCCGGGATTTAAAAAAATACTGGAATGTGGATAAAATCGATTGGGGCATATGGATCAGTA
CTTACATTTTTACAATATGCTTTGCTGCCAATGTGGGATTGTTGTTTGGTGTTATCTGCACCATAGCTAT
CGTGTTAGGACGTTTCCCAAGGGCAAAGACTTTAAGCATAACAGACATGAAAGAAATGGAATTGAAGGTG
AAGACAGAAATGCATGATGAAACCTCGCAACAGATAAAAATCATCTCAATAAACAACCCACTTGTTTTCC
TGAATGCAAAGAAATTTAGTGCTGATTTGATGAAAATAATCCTAAAGGAAAGTGACAGCAACCAACCACT
TGATGATGTCAGCAAGTGTGAACAGAACACCTTGCTCAGTTCCCTGTCCAACGGCAACTGCAATGAAGAG
GCTTCCCAGCCCTGCTCCAGCGAGAAGTGTTCTTTGGTCCTGAATTGCAGTGGCTTGACCTTTTTTGACT
ACACAGGAGTCTCCACGCTTGTTGAGCTCTACCTTGATTGCAAGAGCAGGAGTGTGGATGTGTTCTTAGC
CAACTGTACTGCATCCTTGATAAAAGCAATGACATACTATGGAGACCTAGACACCGAAAAACCAATTTTT
TTTGACTCGGTACCTGCTGCGATAAGTATCATCCAATCAAATAAGAATTTGAGCAAGGCCAGTGACCACA
GTGAAGTCTGA

Translation (656 aa):
MTGAKRKKRSVLWGKMHTPHREDIKQWCKRRLPILEWAPQYNLKENLLPDTVSGIMLAVQQVAQGLSFAM
LSSVHPVFGLYGSLFPAIIYAIFGMGRHVATGTFALTSLISANAVERLVPQSSRNLTTQSNSSVLGLSEF
ELQRIGVAAAVSFLGGVIQLVMFVLQLGSATFLLTEPVISAMTTGAATHVVTSQVKYLLGIKMPYISGPL
GFFYIYAYVFENIKSVQLEALLFSLLSIIVLVLVKELNEQFKRKIKVVLPVDLVLIIAASFACYCTNMEN
TYGLEVVGHIPNGIPPPRAPPMNILSAVLTEAFGVALVGYVASLALAQGSAKKFKYSVDDNQEFLAHGLS
NVIPSFLFCIPSAAAMGRTAGLYSTGAKTQVACLISCIFVLIVIYAIGPLLYWLPMCVLASIIVVGLKGM
LIQFRDLKKYWNVDKIDWGIWISTYIFTICFAANVGLLFGVICTIAIVLGRFPRAKTLSITDMKEMELKV
KTEMHDETSQQIKIISINNPLVFLNAKKFSADLMKIILKESDSNQPLDDVSKCEQNTLLSSLSNGNCNEE
ASQPCSSEKCSLVLNCSGLTFFDYTGVSTLVELYLDCKSRSVDVFLANCTASLIKAMTYYGDLDTEKPIF
FDSVPAAISIIQSNKNLSKASDHSEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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