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Report for CCDS18003.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18003.1 Public Mus musculus 4 Coq3 23 108 98 CCDS HistoryNCBI Gene:230027Re-query CCDS DB by CCDS ID:18003.1Re-query CCDS DB by GeneID:230027See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18003.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029909.2 ENSMUSP00000029909.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029909.2Link to Ensembl Protein Viewer:ENSMUSP00000029909.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000029909Re-query CCDS DB by Protein ID:ENSMUSP00000029909
Original member NCBI NM_172687.2 NP_766275.1 Updated not alive Link to Nucleotide Sequence:NM_172687.2Link to Protein Sequence:NP_766275.1Re-query CCDS DB by Nucleotide ID:NM_172687Re-query CCDS DB by Protein ID:NP_766275
Current member NCBI NM_172687.3 NP_766275.1 Accepted alive Link to Nucleotide Sequence:NM_172687.3Link to Protein Sequence:NP_766275.1Re-query CCDS DB by Nucleotide ID:NM_172687Re-query CCDS DB by Protein ID:NP_766275Link to BLAST:NP_766275.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766275.1 370 Q8BMS4 370 100% 0 0

Chromosomal Locations for CCDS 18003.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 21879688 21879796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 21892809 21892935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 21896555 21896707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 21899058 21899157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 21900264 21900506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 21908483 21908642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 21910419 21910639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1113 nt):
ATGTGGAGAGGTGGAAGGCTGGGCTCTCGTGGGGTTCGTCTCCTGGAAACGCTAGGGTTTGGGTGCCCCA
GCGCGGTCGCCCAGCCTCCTCGCCTAACTTCACGGTCGGCTTACTCAGGGACGCAGCTCACTAGGAATCT
ACAGATTAAGCCGTGGGAACTCGGTGAACACGGGACCATGTGCTTTAGATCCTACAGGATGGCTCTCTCC
TGTTTGAGCAGAGTAAAAACTTACAGGACCCCTTGGAAGAGATTGTACAGTACTTCACAAACAACAGTTG
ACAGCAGGGAGGTCAAAAACTTCCAGGCCCTGGCTCACACGTGGTGGGATGAGTACGGAAAGTTTGCGCC
TCTTCATTCTATGAATGACCTACGGGTGCCATTCATTAGAGACAATCTTTTGAAAACAAGTGCTAGTCAC
CATCCAGGAAAGCCTTTATCTGGGATGAAGATTCTTGACGTTGGCTGTGGCGGTGGGTTATTAACTGAAC
CTCTAGGGAGACTGGGAGCTTCAGTTGTTGGAATTGATCCCGTGGCTGAAAACATTAAGATAGCACAGCA
CCATAAGTCCTTTGATCCAGTCCTGGATAAGAGGATACAGTACAAAGTGTGTTCCCTGGAGGAGGCCGTG
GATGAGAGCGCAGAGTGTTTTGATGCTGTCGTGGCTTCTGAAGTTGTGGAGCATGTGAGCCACCTGGAAA
TGTTCATCCAGTGCTGCTATCAAGTGCTGAAACCCGGTGGCTCTTTATTCATTACTACAGTGAACAAAAC
ACAGCTGTCCTATGCCTTGGGAATTGTTTTCGCAGAGCAAATTGCAGGCATTGTTCCAAAAGGCACTCAT
ACGTGGGAAAAGTTTGTTTCACCTGAAAAGCTAGAGAGTATCTTGGAACCAAATGGTCTGTCAGTTGAAA
CTGTGGCAGGATTGGTCTATAATCCTTTCTCAGGTTACTGGCATTGGAGTGAAAATACCAGCCTTAACTA
TGCAGCCCATGCTGTGAGATCCAGGGCTCAGGAGCACCAGGAGCCTGCTGAGTCTGCTTTAAAGGGGGAA
ACAGGAGCACTCCATGCTAACACCTCCGGTAGCCCCAGTGTACGGGAGGAGCAGAGGACATGA

Translation (370 aa):
MWRGGRLGSRGVRLLETLGFGCPSAVAQPPRLTSRSAYSGTQLTRNLQIKPWELGEHGTMCFRSYRMALS
CLSRVKTYRTPWKRLYSTSQTTVDSREVKNFQALAHTWWDEYGKFAPLHSMNDLRVPFIRDNLLKTSASH
HPGKPLSGMKILDVGCGGGLLTEPLGRLGASVVGIDPVAENIKIAQHHKSFDPVLDKRIQYKVCSLEEAV
DESAECFDAVVASEVVEHVSHLEMFIQCCYQVLKPGGSLFITTVNKTQLSYALGIVFAEQIAGIVPKGTH
TWEKFVSPEKLESILEPNGLSVETVAGLVYNPFSGYWHWSENTSLNYAAHAVRSRAQEHQEPAESALKGE
TGALHANTSGSPSVREEQRT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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