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Report for CCDS18030.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18030.1 Public Mus musculus 4 Slc35a1 23 108 98 CCDS HistoryNCBI Gene:24060Re-query CCDS DB by CCDS ID:18030.1Re-query CCDS DB by GeneID:24060See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18030.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029970.13 ENSMUSP00000029970.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029970.13Link to Ensembl Protein Viewer:ENSMUSP00000029970.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000029970Re-query CCDS DB by Protein ID:ENSMUSP00000029970
Original member NCBI NM_011895.3 NP_036025.2 Updated not alive Link to Nucleotide Sequence:NM_011895.3Link to Protein Sequence:NP_036025.2Re-query CCDS DB by Nucleotide ID:NM_011895Re-query CCDS DB by Protein ID:NP_036025
Current member NCBI NM_011895.4 NP_036025.2 Accepted alive Link to Nucleotide Sequence:NM_011895.4Link to Protein Sequence:NP_036025.2Re-query CCDS DB by Nucleotide ID:NM_011895Re-query CCDS DB by Protein ID:NP_036025Link to BLAST:NP_036025.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036025.2 336 Q61420 336 100% 0 0

Chromosomal Locations for CCDS 18030.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 34664106 34664230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34668926 34669060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34669487 34669663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34671780 34671846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34675030 34675182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34675472 34675631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34683285 34683462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34687244 34687259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1011 nt):
ATGGCTCCGGCGAGAGAAAATGTCAGTTTATTCTTCAAGCTGTACTGCTTGACGGTGATGACTCTGGTGG
CTGCCGCTTACACCGTAGCTTTAAGATACACAAGGACAACAGCTGAAGAACTCTACTTCTCAACCACTGC
CGTGTGTATCACAGAAGTGATAAAGTTACTGATAAGTGTTGGCCTGTTAGCTAAGGAAACTGGCAGTTTG
GGTAGATTTAAAGCCTCATTAAGTGAAAATGTCTTGGGGAGCCCCAAGGAACTGGCGAAGTTGAGTGTGC
CATCACTAGTGTATGCTGTGCAGAACAACATGGCCTTCCTGGCTCTCAGTAATCTGGATGCAGCAGTGTA
CCAGGTGACCTATCAACTGAAGATCCCCTGCACTGCTTTATGTACTGTTTTAATGTTAAATCGAACACTC
AGCAAATTACAGTGGATTTCCGTCTTCATGCTGTGTGGTGGGGTCACACTCGTACAGTGGAAACCAGCCC
AAGCTACAAAAGTCGTGGTAGCGCAGAATCCATTGTTAGGCTTTGGTGCTATAGCTATTGCTGTATTGTG
CTCTGGATTTGCAGGAGTTTATTTTGAAAAAGTCTTAAAGAGTTCCGACACTTCCCTTTGGGTGAGAAAC
ATTCAGATGTATCTGTCAGGGATCGTTGTGACGTTAGCTGGTACCTACTTGTCAGATGGAGCTGAAATTC
AAGAAAAAGGATTCTTCTATGGCTACACGTATTATGTCTGGTTTGTTATCTTCCTTGCTAGTGTGGGAGG
CCTCTACACGTCAGTGGTGGTGAAGTATACAGACAACATCATGAAAGGCTTCTCTGCTGCCGCAGCCATT
GTTCTTTCTACCATTGCTTCAGTCCTACTGTTTGGATTACAGATAACACTTTCATTTGCACTGGGAGCTC
TTCTTGTGTGTGTTTCCATATATCTCTATGGGTTACCCAGACAAGATACTACATCCATTCAACAAGAAGC
AACTTCAAAAGAGAGAATCATTGGTGTGTGA

Translation (336 aa):
MAPARENVSLFFKLYCLTVMTLVAAAYTVALRYTRTTAEELYFSTTAVCITEVIKLLISVGLLAKETGSL
GRFKASLSENVLGSPKELAKLSVPSLVYAVQNNMAFLALSNLDAAVYQVTYQLKIPCTALCTVLMLNRTL
SKLQWISVFMLCGGVTLVQWKPAQATKVVVAQNPLLGFGAIAIAVLCSGFAGVYFEKVLKSSDTSLWVRN
IQMYLSGIVVTLAGTYLSDGAEIQEKGFFYGYTYYVWFVIFLASVGGLYTSVVVKYTDNIMKGFSAAAAI
VLSTIASVLLFGLQITLSFALGALLVCVSIYLYGLPRQDTTSIQQEATSKERIIGV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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