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Report for CCDS18099.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18099.1 Public Mus musculus 4 Car9 23 108 98 CCDS HistoryNCBI Gene:230099Re-query CCDS DB by CCDS ID:18099.1Re-query CCDS DB by GeneID:230099See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18099.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030183.9 ENSMUSP00000030183.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030183.9Link to Ensembl Protein Viewer:ENSMUSP00000030183.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000030183Re-query CCDS DB by Protein ID:ENSMUSP00000030183
Original member Current member NCBI NM_139305.2 NP_647466.2 Accepted alive Link to Nucleotide Sequence:NM_139305.2Link to Protein Sequence:NP_647466.2Re-query CCDS DB by Nucleotide ID:NM_139305Re-query CCDS DB by Protein ID:NP_647466Link to BLAST:NP_647466.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_647466.2 437 Q8VHB5-1 437 100% 0 0

Chromosomal Locations for CCDS 18099.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 43507056 43507395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43508314 43508343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43508603 43508773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43508893 43509035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43509118 43509210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43510197 43510263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43511827 43511984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43512142 43512277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43512412 43512438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43512852 43512933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43513044 43513110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1314 nt):
ATGGCCTCCCTGGGCCCCAGCCCCTGGGCCCCTTTGTCGACCCCAGCCCCTACTGCACAGCTGCTGCTGT
TCCTGCTGCTCCAAGTGTCTGCTCAGCCCCAGGGCCTGTCCGGGATGCAGGGGGAGCCCTCCTTGGGAGA
CAGTTCATCTGGGGAGGATGAGCTGGGCGTGGATGTTCTGCCCAGTGAAGAGGATGCACCTGAAGAGGCG
GATCCACCCGATGGGGAGGATCCACCTGAAGTTAATTCTGAAGACAGGATGGAGGAGTCCCTTGGGTTAG
AGGATCTATCGACTCCCGAGGCTCCTGAGCACAGTCAAGGTTCCCACGGGGATGAAAAAGGGGGTGGCCA
CAGTCATTGGAGCTATGGAGGCACCCTACTCTGGCCCCAGGTGTCCCCAGCCTGTGCTGGCCGCTTTCAG
TCCCCGGTAGACATCCGCCTGGAGCGCACCGCATTCTGCCGCACTCTGCAACCCCTGGAACTTCTGGGTT
ATGAGCTCCAGCCTCTCCCGGAACTGAGCCTATCCAACAATGGCCACACGGTACAGCTGACTCTGCCGCC
GGGGCTGAAGATGGCTCTGGGACCTGGGCAGGAATACCGGGCCTTGCAGTTGCATCTACACTGGGGAACT
TCAGATCACCCAGGCTCAGAACACACAGTCAATGGTCACCGTTTCCCTGCTGAGATCCACGTGGTGCACC
TCAGTACTGCTTTCTCCGAACTTCATGAAGCCTTGGGCCGCCCAGGAGGCCTGGCAGTTTTGGCTGCCTT
TCTGCAGGAGAGCCCAGAAGAAAACAGTGCTTACGAACAGTTGCTGTCCCATTTGGAAGAAATCTCGGAG
GAAGGCTCCAAGATTGAGATCCCAGGTTTGGATGTATCTGCACTGTTGCCCTCGGACCTCAGCCGCTACT
ACCGATATGAAGGGTCTCTGACCACACCTCCCTGCAGCCAGGGGGTCATCTGGACTGTGTTCAATGAGAC
AGTGAAACTGAGCGCTAAGCAGCTCCATACTCTCTCCGTTTCCTTGTGGGGACCTCGTGATTCTCGGCTA
CAACTGAACTTCCGAGCCACGCAACCCTTGAATGGGCGAACGATTGAGGCTTCCTTCCCTGCTGCAGAGG
ATAGCAGCCCTGAGCCAGTCCATGTGAATTCCTGCTTCACTGCTGGTGACATCCTAGCCTTGGTGTTTGG
CCTTCTCTTTGCTGTCACCAGCATCGCCTTCCTCCTACAGCTGAGGAGGCAGCACAGGCACAGAAGTGGG
ACCAAAGATAGAGTTAGCTACAGTCCGGCAGAGATGACAGAAACTGGAGCCTAA

Translation (437 aa):
MASLGPSPWAPLSTPAPTAQLLLFLLLQVSAQPQGLSGMQGEPSLGDSSSGEDELGVDVLPSEEDAPEEA
DPPDGEDPPEVNSEDRMEESLGLEDLSTPEAPEHSQGSHGDEKGGGHSHWSYGGTLLWPQVSPACAGRFQ
SPVDIRLERTAFCRTLQPLELLGYELQPLPELSLSNNGHTVQLTLPPGLKMALGPGQEYRALQLHLHWGT
SDHPGSEHTVNGHRFPAEIHVVHLSTAFSELHEALGRPGGLAVLAAFLQESPEENSAYEQLLSHLEEISE
EGSKIEIPGLDVSALLPSDLSRYYRYEGSLTTPPCSQGVIWTVFNETVKLSAKQLHTLSVSLWGPRDSRL
QLNFRATQPLNGRTIEASFPAAEDSSPEPVHVNSCFTAGDILALVFGLLFAVTSIAFLLQLRRQHRHRSG
TKDRVSYSPAEMTETGA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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