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Report for CCDS18388.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18388.1 Public Mus musculus 4 Pgm1 23 108 98 CCDS HistoryNCBI Gene:72157Re-query CCDS DB by CCDS ID:18388.1Re-query CCDS DB by GeneID:72157See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18388.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058351.15 ENSMUSP00000061227.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058351.15Link to Ensembl Protein Viewer:ENSMUSP00000061227.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000058351Re-query CCDS DB by Protein ID:ENSMUSP00000061227
Original member NCBI NM_028132.3 NP_082408.3 Updated not alive Link to Nucleotide Sequence:NM_028132.3Link to Protein Sequence:NP_082408.3Re-query CCDS DB by Nucleotide ID:NM_028132Re-query CCDS DB by Protein ID:NP_082408
Current member NCBI NM_028132.4 NP_082408.3 Accepted alive Link to Nucleotide Sequence:NM_028132.4Link to Protein Sequence:NP_082408.3Re-query CCDS DB by Nucleotide ID:NM_028132Re-query CCDS DB by Protein ID:NP_082408Link to BLAST:NP_082408.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082408.3 562 Q9D0F9 562 100% 0 0

Chromosomal Locations for CCDS 18388.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 99929566 99929811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99961456 99961618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99962044 99962190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99963518 99963643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99964675 99964865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99967059 99967213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99969987 99970102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99978865 99979000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99981884 99982067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99983969 99984103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99986675 99986764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1689 nt):
ATGGTGAAGATCGTGACAGTGAAGACGCAGGCATATCCGGATCAGAAGCCGGGCACCAGCGGATTGCGGA
AGCGAGTGAAGGTTTTCCAGAGCAACGCCAACTATGCGGAGAATTTCATCCAGAGCATCGTCTCTACCGT
GGAGCCGGCGCTGAGGCAGGAGGCCACGCTGGTTGTGGGCGGGGACGGCCGCTTCTACATGACCGAGGCC
ATCCAGCTCATCGTACGCATCGCTGCAGCCAACGGGATTGGTCGCCTGGTTATTGGGCAGAATGGAATAC
TCTCCACCCCTGCCGTATCTTGCATCATCCGAAAAATCAAAGCTATTGGTGGGATCATTCTGACAGCCAG
CCATAATCCAGGAGGGCCCAATGGAGATTTTGGAATTAAATTCAATATTTCTAATGGGGGTCCTGCTCCA
GAAGCAATCACTGATAAAATTTTCCAAATCAGCAAGACAATCGAAGAATATGCCATTTGCCCTGACTTGA
AGGTAGACCTCGGTGTTCTGGGAAAGCAGCAGTTTGACTTGGAAAACAAGTTCAAGCCCTTCACAGTGGA
GATTGTGGACTCAGTGGAGGCCTATGCCACAATGCTGAGAAACATCTTCGATTTCAACGCACTGAAGGAG
CTACTCTCTGGTCCAAACAGACTGAAGATCCGCATAGACGCCATGCACGGAGTTGTGGGACCGTACGTAA
AGAAGATCCTCTGTGAAGAACTTGGTGCCCCTGCAAACTCAGCTGTGAACTGTGTTCCCCTGGAGGATTT
TGGAGGCCACCATCCCGACCCCAATCTCACCTATGCTGCTGACCTAGTGGAGACCATGAAGTCAGGAGAG
CATGATTTCGGGGCTGCCTTTGATGGTGACGGGGATCGAAACATGATTCTGGGCAAGCACGGGTTCTTTG
TGAATCCTTCTGACTCTGTGGCTGTCATCGCTGCCAACATCTTCAGCATTCCGTACTTCCAGCAGACCGG
GGTCCGTGGCTTTGCACGCAGCATGCCCACAAGTGGTGCTCTGGACCGGGTAGCAAATGCCACAAAGATC
GCTTTGTATGAGACCCCAACTGGCTGGAAGTTTTTTGGGAATTTGATGGATGCAAGCAAGCTGTCCCTCT
GTGGAGAGGAGAGCTTTGGGACCGGTTCGGACCATATCCGAGAGAAAGATGGACTGTGGGCCGTCCTGGC
CTGGCTCTCCATTCTGGCCACCCGCAAACAGAGCGTGGAGGACATCCTCAAAGACCACTGGCAGAAGTTT
GGTCGGAACTTCTTTACCAGGTATGACTACGAGGAGGTGGAAGCTGAGGGTGCAAACAAAATGATGAAGG
ACCTGGAGGCCCTGATGCTGGACCGCTCCTTTGTGGGGAAGCAGTTCTCAGCAAACGATAAAGTCTACAC
TGTGGAGAAAGCGGATAACTTTGAATATAGTGACCCAGTAGATGGAAGCATTTCAAAAAATCAGGGCTTG
CGGCTTATTTTTGCAGATGGTTCTCGTATCATCTTCAGACTGAGTGGCACCGGGAGTGCAGGGGCTACCA
TCCGGCTGTATATTGATAGCTACGAGAAGGACGTTGCCAAGATCAACCAGGACCCCCAGGTGATGCTGGC
GCCCCTGATCTCCATTGCTCTGAAAGTGTCCCAGCTCCAGGAGAGGACGGGTCGCACTGCGCCCACTGTC
ATCACCTAG

Translation (562 aa):
MVKIVTVKTQAYPDQKPGTSGLRKRVKVFQSNANYAENFIQSIVSTVEPALRQEATLVVGGDGRFYMTEA
IQLIVRIAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTASHNPGGPNGDFGIKFNISNGGPAP
EAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKPFTVEIVDSVEAYATMLRNIFDFNALKE
LLSGPNRLKIRIDAMHGVVGPYVKKILCEELGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKSGE
HDFGAAFDGDGDRNMILGKHGFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKI
ALYETPTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWQKF
GRNFFTRYDYEEVEAEGANKMMKDLEALMLDRSFVGKQFSANDKVYTVEKADNFEYSDPVDGSISKNQGL
RLIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDVAKINQDPQVMLAPLISIALKVSQLQERTGRTAPTV
IT


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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