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Report for CCDS18409.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18409.1 Public Mus musculus 4 Slc35d1 23 108 98 CCDS HistoryNCBI Gene:242585Re-query CCDS DB by CCDS ID:18409.1Re-query CCDS DB by GeneID:242585See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18409.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000150285.7 ENSMUSP00000122124.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000150285.7Link to Ensembl Protein Viewer:ENSMUSP00000122124.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000150285Re-query CCDS DB by Protein ID:ENSMUSP00000122124
Original member Current member NCBI NM_177732.5 NP_808400.1 Accepted alive Link to Nucleotide Sequence:NM_177732.5Link to Protein Sequence:NP_808400.1Re-query CCDS DB by Nucleotide ID:NM_177732Re-query CCDS DB by Protein ID:NP_808400Link to BLAST:NP_808400.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808400.1 306 A2AKQ0-2 306 100% 0 0

Chromosomal Locations for CCDS 18409.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 103173672 103173780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103184822 103184904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103205106 103205198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103208110 103208212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103210529 103210597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103211303 103211374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103213165 103213232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103213871 103213957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103214059 103214092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103214664 103214866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (921 nt):
ATGGCGGAAGTCCACAGACGTCAGCATGCTCCGGTTAAAGGAGAAGCCCCCGCGAAATCCTCCACACACA
GAGATGAGGAGGAGCTGGGGATGGCGCCGGCCGAAACGCTAACGGTGTTCCTGAAGCTGCTGGCCGCCGG
TTTCTACGGCGTGAGCTCCTTCCTCATCGTGGTGGTCAACAAGAGCGTGCTCACCAACTACAGATTTCCA
TCCTCGCTATGTGTTGGACTTGGCCAGATGGTGGCCACGGTAGCGGTTCTCTGGGTGGGAAAGACACTCA
GAGTAGTCAAGTTTCCTGACTTCGACAGAAATGTACCTCGAAAGACGTTTCCACTACCTCTACTATATTT
TGGGAACCAAATCACGGGACTGTTCAGCACAAAGAAACTGAACCTGCCCATGTTTACAGTTCTGAGAAGG
TTCTCCATTCTGTTTACAATGTTTGCTGAAGGCGCTCTACTCAAGAAGACTTTCTCCTGGGGTATTAAGA
TGACTGTATTTGCAATGATCATCGGAGCCTTCGTAGCTGCCAGCTCTGACTTGGCCTTTGATCTGGAAGG
ATATGTTTTTATTTTGATCAATGATGTCCTGACAGCAGCAAATGGTGCATACGTGAAACAGAAGTTAGAT
TCAAAAGAGCTGGGAAAGTATGGCCTGCTCTATTACAATGCACTGTTCATGATTCTGCCCACCCTGGCCA
TTGCGTATTTCACAGGAGATGCACAAAAGAATATATTAATAACTTATATTGGAATGGTCTTTGGTGGAGA
TTATATTTTCACATGGACAAATTTTATCGGCCTAAATATCAGTATTGCTGGAAGCCTGGTGTACTCTTAC
ATCACTTTCACGGAAGAGCAGCTGAGCAAGCAGTCAGAGGCCAGTAACAAGCTGGACACGAAGGGAAAAG
GAGCAGTGTGA

Translation (306 aa):
MAEVHRRQHAPVKGEAPAKSSTHRDEEELGMAPAETLTVFLKLLAAGFYGVSSFLIVVVNKSVLTNYRFP
SSLCVGLGQMVATVAVLWVGKTLRVVKFPDFDRNVPRKTFPLPLLYFGNQITGLFSTKKLNLPMFTVLRR
FSILFTMFAEGALLKKTFSWGIKMTVFAMIIGAFVAASSDLAFDLEGYVFILINDVLTAANGAYVKQKLD
SKELGKYGLLYYNALFMILPTLAIAYFTGDAQKNILITYIGMVFGGDYIFTWTNFIGLNISIAGSLVYSY
ITFTEEQLSKQSEASNKLDTKGKGAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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