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Report for CCDS18417.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18417.1 Public Mus musculus 4 Plpp3 23 108 98 CCDS HistoryNCBI Gene:67916Re-query CCDS DB by CCDS ID:18417.1Re-query CCDS DB by GeneID:67916See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18417.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064139.7 ENSMUSP00000065719.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064139.7Link to Ensembl Protein Viewer:ENSMUSP00000065719.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000064139Re-query CCDS DB by Protein ID:ENSMUSP00000065719
Original member Current member NCBI NM_080555.2 NP_542122.1 Accepted alive Link to Nucleotide Sequence:NM_080555.2Link to Protein Sequence:NP_542122.1Re-query CCDS DB by Nucleotide ID:NM_080555Re-query CCDS DB by Protein ID:NP_542122Link to BLAST:NP_542122.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_542122.1 312 Q99JY8 312 100% 0 0

Chromosomal Locations for CCDS 18417.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 105157825 105157963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 105194803 105194960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 105208524 105208804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 105209200 105209257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 105219328 105219504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 105230897 105231022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGCAAAGCTACAAGTACGACAAGGCGATCGTCCCTGAGAGTAAGAACGGCGGCAGCCCGGCGCTCAACA
ACAACCCGAGGAAGGGCGGCAGCAAGCGGGTGCTGCTCATCTGCCTGGACCTCTTCTGCCTCTTCATGGC
GGCTCTGCCCTTCCTCATCATCGAGACAAGCACCATTAAGCCTTACCGTCGAGGGTTTTACTGCAATGAC
GAGAGCATCAAGTATCCCCTGAAAGTCAGTGAGACTATAAACGATGCTGTGCTCTGTGCGGTGGGGATCG
TCATCGCCATCCTGGCGATCATTACAGGGGAATTCTACCGGATCTATTACCTCAAGGAGAAGTCCCGCTC
CACCACTCAGAACCCGTATGTGGCAGCTCTCTATAAGCAAGTGGGATGCTTCCTTTTCGGCTGTGCCATT
AGCCAGTCCTTCACCGACATCGCCAAAGTGTCCATCGGGCGCCTGAGGCCTCACTTCCTGAGCGTCTGTG
ACCCTGATTTCAGTCAGATCAATTGCTCCGAGGGCTACATTCAGAACTACAGGTGCAGAGGAGAAGACAG
CAAAGTACAGGAGGCCAGGAAGTCCTTCTTCTCGGGCCACGCCTCCTTCTCCATGTTCACTATGCTGTAT
CTGGTGCTCTACCTTCAGGCCCGCTTCACCTGGCGCGGGGCCCGACTGCTCCGCCCCCTCCTGCAGTTCA
CTTTGCTCATGATGGCCTTCTACACGGGATTGTCACGGGTATCTGACTACAAGCATCATCCTAGCGATGT
CCTGGCAGGATTTGCCCAAGGAGCTCTGGTGGCCTGCTGCATAGTGTTCTTCGTGTCCGACCTCTTCAAG
ACTAAGACGAGCCTCTCACTGCCCGCCCCTGCGATCAGGAGGGAGATCCTGTCTCCCGTGGACATCATCG
ACAGGAACAATCACCATAACATGGTGTAG

Translation (312 aa):
MQSYKYDKAIVPESKNGGSPALNNNPRKGGSKRVLLICLDLFCLFMAALPFLIIETSTIKPYRRGFYCND
ESIKYPLKVSETINDAVLCAVGIVIAILAIITGEFYRIYYLKEKSRSTTQNPYVAALYKQVGCFLFGCAI
SQSFTDIAKVSIGRLRPHFLSVCDPDFSQINCSEGYIQNYRCRGEDSKVQEARKSFFSGHASFSMFTMLY
LVLYLQARFTWRGARLLRPLLQFTLLMMAFYTGLSRVSDYKHHPSDVLAGFAQGALVACCIVFFVSDLFK
TKTSLSLPAPAIRREILSPVDIIDRNNHHNMV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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