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Report for CCDS18443.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18443.1 Public Mus musculus 4 Cpt2 23 108 98 CCDS HistoryNCBI Gene:12896Re-query CCDS DB by CCDS ID:18443.1Re-query CCDS DB by GeneID:12896See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18443.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030345.14 ENSMUSP00000030345.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030345.14Link to Ensembl Protein Viewer:ENSMUSP00000030345.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000030345Re-query CCDS DB by Protein ID:ENSMUSP00000030345
Original member NCBI NM_009949.2 NP_034079.2 Updated not alive Link to Nucleotide Sequence:NM_009949.2Link to Protein Sequence:NP_034079.2Re-query CCDS DB by Nucleotide ID:NM_009949Re-query CCDS DB by Protein ID:NP_034079
Current member NCBI NM_009949.3 NP_034079.2 Accepted alive Link to Nucleotide Sequence:NM_009949.3Link to Protein Sequence:NP_034079.2Re-query CCDS DB by Nucleotide ID:NM_009949Re-query CCDS DB by Protein ID:NP_034079Link to BLAST:NP_034079.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034079.2 658 P52825 658 100% 0 0

Chromosomal Locations for CCDS 18443.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 107904232 107904563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107906921 107908225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107912641 107912747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107914264 107914344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107923315 107923466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1977 nt):
ATGATGCCGCGCCTGCTGTTGCGTGACTGGCCCCGGTGCCCCTCGCTTGTCCTGGGAGCCCCTAGTCGGC
CCTTAAGTGCTGTCTCGGGGCCCGCCGAGTATCTGCAGCACAGCATCGTACCCACCATGCACTACCAGGA
CAGCCTGCCCAGGCTGCCTATCCCTAAACTTGAAGACACCATGAAGAGATACCTCAGTGCACAGAAGCCT
CTCTTGAATGACAGCCAGTTCAGGAAGACAGAAGTGTTGTGTAAGGATTTTGAGAACGGCATTGGGAAGG
AGCTGCATGCGCACCTGCTCGCTCAGGATAAACAGAATAAGCACACCAGCTACATCTCAGGCCCCTGGTT
TGATATGTATTTAACTGCTCGAGACTCTGTCGTTTTAAACTTTAATCCATTCATGGCATTCAATCCGGAC
CCGAAGTCTGAGTATAATGACCAGCTCACCAGGGCCACCAACTTGACTGTTTCTGCAGTGCGGTTTCTGA
AGACACTTCGGGCTGGCCTTCTAGAGCCAGAAGTGTTCCACTTGAACCCTGCCAGAAGTGACACAGATGC
CTTCAAAAGACTCATCCGCTTTGTTCCTTCCTCTCTCTCCTGGTATGGAGCCTACCTGGTCAATGCATAT
CCCCTGGATATGTCCCAATATTTTCGGCTTTTCAATTCAACTCGTATACCCAAACCCAGTCGTGATGAAC
TCTTTACTGATACCAAGGCTAGACACCTCCTGGTCCTAAGAAAAGGACATTTCTATGTCTTTGATGTCCT
CGATCAAGATGGGAACATTGTGAATCCCTCAGAAATCCAGGCACATCTAAAGTACATTCTCTCAGACAGC
AGCCCTGTGCCCGAGTTTCCCCTGGCTTATTTGACCAGTGAGAACCGAGATGTCTGGGCAGAGCTCAGAC
AGAAGTTGATTCATGGTGGCAATGAGGAAACCCTGAGGAAAGTGGACTCTGCTGTCTTCTGCCTCTGCTT
AGATGACTTCCCGATGAAGGATCTTGTTCACTTGTCACACACCATGCTGCACGGTGACGGCACGAACCGC
TGGTTTGATAAGTCCTTTAACCTCATTGTAGCCAAAGATGGCACTGCTGCAGTCCACTTCGAGCATGCGT
GGGGGGATGGTGTAGCAGTCCTTAGGTTTTTCAATGAAGTGTTCAGAGACAGCACTCAGACCCCTGCCAT
TGCTCCCCAGAGCCAGCCGGCCGCCACCGACTCCTCCGTGTCTGTGCAGAAGCTCAGTTTTAAGCTCAGC
AGTGCTCTAAAGGCTGGCGTCACCGCTGCTAAGGAGAAGTTTGATGCCACCATGAAAACCCTCACCATTG
ACGCCATTCAGTTTCAGAGAGGTGGCAAGGAATTCTTGAAGAAGAAGAAGCTGAGCCCTGATGCAGTGGC
CCAGCTGGCCTTCCAGATGGCTTTCCTGCGACAGTATGGCCAGACAGTGGCTACCTATGAATCCTGCAGC
ACTGCAGCCTTCAAACACGGCCGCACAGAGACTATTCGCCCAGCTTCCATCTTTACTAAGAGATGCTCCG
AGGCATTTGTCAGGGAGCCCTCCAAGCACAGTGTGGGCGAGCTTCAGCATATGATGGCTGAGTGCTCCAA
ATACCATGGCCAGCTGACCAAAGAAGCAGCGATGGGCCAGGGCTTTGACCGACACTTGTTTGCTCTACGG
TATCTGGCAGCAGCCAGAGGGGTCACCCTGCCTGAGCTCTATCAGGACCCTGCATACCAGCGGATAAACC
ACAACATCCTGTCCACCAGCACTCTGAGCAGCCCAGCAGTGAGCCTCGGTGGCTTTGCCCCTGTGGTCCC
TGATGGCTTTGGCATTGCGTATGCTGTTCACGATGACTGGATAGGCTGCAATGTCTCCTCCTACTCAGGA
CGCAATGCCCGAGAGTTTCTCCACTGTGTCCAGAAGTGCTTGGAAGACATGTTCGATGCCCTCGAAGGCA
AAGCCATCAAAACTTAG

Translation (658 aa):
MMPRLLLRDWPRCPSLVLGAPSRPLSAVSGPAEYLQHSIVPTMHYQDSLPRLPIPKLEDTMKRYLSAQKP
LLNDSQFRKTEVLCKDFENGIGKELHAHLLAQDKQNKHTSYISGPWFDMYLTARDSVVLNFNPFMAFNPD
PKSEYNDQLTRATNLTVSAVRFLKTLRAGLLEPEVFHLNPARSDTDAFKRLIRFVPSSLSWYGAYLVNAY
PLDMSQYFRLFNSTRIPKPSRDELFTDTKARHLLVLRKGHFYVFDVLDQDGNIVNPSEIQAHLKYILSDS
SPVPEFPLAYLTSENRDVWAELRQKLIHGGNEETLRKVDSAVFCLCLDDFPMKDLVHLSHTMLHGDGTNR
WFDKSFNLIVAKDGTAAVHFEHAWGDGVAVLRFFNEVFRDSTQTPAIAPQSQPAATDSSVSVQKLSFKLS
SALKAGVTAAKEKFDATMKTLTIDAIQFQRGGKEFLKKKKLSPDAVAQLAFQMAFLRQYGQTVATYESCS
TAAFKHGRTETIRPASIFTKRCSEAFVREPSKHSVGELQHMMAECSKYHGQLTKEAAMGQGFDRHLFALR
YLAAARGVTLPELYQDPAYQRINHNILSTSTLSSPAVSLGGFAPVVPDGFGIAYAVHDDWIGCNVSSYSG
RNAREFLHCVQKCLEDMFDALEGKAIKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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