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Report for CCDS18474.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18474.1 Public Mus musculus 4 Slc5a9 23 108 98 CCDS HistoryNCBI Gene:230612Re-query CCDS DB by CCDS ID:18474.1Re-query CCDS DB by GeneID:230612See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18474.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102719.7 ENSMUSP00000099780.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102719.7Link to Ensembl Protein Viewer:ENSMUSP00000099780.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102719Re-query CCDS DB by Protein ID:ENSMUSP00000099780
Original member Current member EBI ENSMUST00000102720.7 ENSMUSP00000099781.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102720.7Link to Ensembl Protein Viewer:ENSMUSP00000099781.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102720Re-query CCDS DB by Protein ID:ENSMUSP00000099781
Original member Current member EBI ENSMUST00000102721.7 ENSMUSP00000099782.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102721.7Link to Ensembl Protein Viewer:ENSMUSP00000099782.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102721Re-query CCDS DB by Protein ID:ENSMUSP00000099782
Original member Current member NCBI NM_145551.4 NP_663526.3 Accepted alive Link to Nucleotide Sequence:NM_145551.4Link to Protein Sequence:NP_663526.3Re-query CCDS DB by Nucleotide ID:NM_145551Re-query CCDS DB by Protein ID:NP_663526Link to BLAST:NP_663526.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663526.3 685 Q8VDT1 685 100% 0 0

Chromosomal Locations for CCDS 18474.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 111877538 111877746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 111880212 111880395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 111883783 111883998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 111885445 111885613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 111887510 111887660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 111889879 111889986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 111890168 111890303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 111890497 111890702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 111890935 111891015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 111891787 111891892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 111893168 111893332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 111893581 111893685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 111896281 111896352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 111898550 111898699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2058 nt):
ATGAACACGGAGCTTGTGGCAATGGAACCAGGAGTGTCAAGGAATGGAGTCAGAACTGAGACAACAACGA
ACCCAAGCCTGGGGCTACATACCTATGACATCGTGGTGGTGGTCATCTATTTTGTCTTTGTTCTTGCTGT
GGGAATTTGGTCATCCATCCGTGCAAGTCGAGGGACCGTTGGTGGCTATTTCCTGGCTGGGAGATCCATG
ACCTGGTGGCCAATTGGAGCATCTCTAATGTCCAGCAATGTGGGCAGTGGCTTATTTATCGGCCTGGCTG
GAACAGGGGCTGCTGGAGGCCTTGCTGTTGGTGGCTTTGAGTGGAACGCAACCTTCCTGCTTCTAGCCCT
GGGCTGGATCTTTGTCCCTGTGTACATAGCAGCTGGTGTGGTCACCATGCCACAGTACCTGAAGAAACGA
TTTGGGGGACAGAGGATCCAGGTGTACATGTCAGTTCTTTCTCTCATTCTCTACATCTTCACCAAGATAT
CGACTGATATCTTCTCTGGAGCCCTCTTCATCCAGATGGCCTTGGGCTGGAATCTCTATCTCTCCACAGT
CATCTTGCTGGTGGTGACAGCTGTCTACACCATTGCAGGGGGCCTCACAGCTGTGATCTACACAGATGCT
CTACAGACTGTGATCATGGTTGGGGGAGCTCTGGTCCTCATGTTTCTGGGCTTTCAGGAGGTTGGCTGGT
ACCCAGGCCTGCAGCAGCTCTATAGACAGGCCATCCCCAATACCACAGTTCCCAATACCACCTGTCACCT
CCCACGGCCTGATGCCTTCCACATGCTTCGAGATCCTGTGAATGGAGACATCCCCTGGCCAGGTCTCATT
TTTGGCCTCACAGTCTTGGCCACCTGGTGTTGGTGCACAGACCAGGTGATTGTGCAGAGGTCTCTCGCGG
CCAAGAATCTTTCACATGCCAAGGGAGGCTCCGTGCTAGGGGGCTACCTAAAGATCCTCCCAATGTTCTT
CATTGTCATGCCTGGCATGATCAGCAGGGCCCTGTACCCAGATGAAGTTGCCTGTGTGGACCCTGACATC
TGTCAAAGAGTGTGTGGGGCCAGAGTTGGATGCTCCAATATTGCCTACCCCAAGCTGGTTATGGCTCTCA
TGCCTGTGGGGCTGCGAGGCCTGATGATTGCTGTGATCATGGCTGCCCTCATGAGCTCACTCACCTCTAT
CTTCAACAGCAGTAGCACCCTGTTTGCCATAGATGTGTGGCAGCGCTTCCGCAGGCAGGCATCGGAGCAA
GAGCTGATGGTGGTAGGCAGGTTGTTCGTAGTCTTCCTGGTAGTCATCAGCATCCTCTGGATCCCCATCA
TCCAGAGCTCCAATAGTGGGCAGCTCTTTGACTACATCCAATCTATCACCAGCTACTTAGCCCCACCCAT
CACAGCCCTCTTCCTGCTGGCTATCTTCTGCAAGAGGGTCAACGAGCCTGGTGCCTTCTGGGGCCTCATG
TTTGGCCTGGTCGTCGGAATACTGCGTATGATTCTGGAGTTCTCATACTCGGCCCCAGCCTGTGGGGAGA
TGGACAGGCGGCCAGCTGTTCTGAAGGACTTCCACTACCTGTACTTTGCCCTTCTCCTCTGTGGACTGAC
CGCGATCATCATTGTCGTAATCAGCTTCTTCACGGAGCCCATCCCCGATGACAAGCTTGCTCGCCTGACC
TGGTGGACAAGGAACTGTGCCGTATCTGACCTGCAGAAGAAAACCTCTGTGAGTGTGAACAACACAGAGG
ATGACAACTCTCCAGGACTGGCAGGGAGGCCAGTGGTAGAGGGCCCTGCAGGAGATGAGGAAGAAGCAAA
CACCACTCAGGGGCCTGAACAACCAGGAGCCCTACACAGGTCCTGGGGAAAATGGCTGTGGAACTGGTTC
TGCGGACTCTCAGGAGCCCCACAGCAAGCCCTGAGCCCAGCTGAGAAGGCTGTGTTGGAGCAGAAGCTGA
CCAGCATCGAGGAGGAGCCGCTCTGGAGACGTGTCTGCAACATCAACGCCATCATCCTGCTAGCCATCAA
CATCTTTCTCTGGGGCTATTTTGCGTGA

Translation (685 aa):
MNTELVAMEPGVSRNGVRTETTTNPSLGLHTYDIVVVVIYFVFVLAVGIWSSIRASRGTVGGYFLAGRSM
TWWPIGASLMSSNVGSGLFIGLAGTGAAGGLAVGGFEWNATFLLLALGWIFVPVYIAAGVVTMPQYLKKR
FGGQRIQVYMSVLSLILYIFTKISTDIFSGALFIQMALGWNLYLSTVILLVVTAVYTIAGGLTAVIYTDA
LQTVIMVGGALVLMFLGFQEVGWYPGLQQLYRQAIPNTTVPNTTCHLPRPDAFHMLRDPVNGDIPWPGLI
FGLTVLATWCWCTDQVIVQRSLAAKNLSHAKGGSVLGGYLKILPMFFIVMPGMISRALYPDEVACVDPDI
CQRVCGARVGCSNIAYPKLVMALMPVGLRGLMIAVIMAALMSSLTSIFNSSSTLFAIDVWQRFRRQASEQ
ELMVVGRLFVVFLVVISILWIPIIQSSNSGQLFDYIQSITSYLAPPITALFLLAIFCKRVNEPGAFWGLM
FGLVVGILRMILEFSYSAPACGEMDRRPAVLKDFHYLYFALLLCGLTAIIIVVISFFTEPIPDDKLARLT
WWTRNCAVSDLQKKTSVSVNNTEDDNSPGLAGRPVVEGPAGDEEEANTTQGPEQPGALHRSWGKWLWNWF
CGLSGAPQQALSPAEKAVLEQKLTSIEEEPLWRRVCNINAIILLAINIFLWGYFA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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