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Report for CCDS18538.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18538.1 Public Mus musculus 4 Slc6a9 23 108 98 CCDS HistoryNCBI Gene:14664Re-query CCDS DB by CCDS ID:18538.1Re-query CCDS DB by GeneID:14664See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18538.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030269.13 ENSMUSP00000030269.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030269.13Link to Ensembl Protein Viewer:ENSMUSP00000030269.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000030269Re-query CCDS DB by Protein ID:ENSMUSP00000030269
Original member Current member EBI ENSMUST00000063857.10 ENSMUSP00000066102.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063857.10Link to Ensembl Protein Viewer:ENSMUSP00000066102.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000063857Re-query CCDS DB by Protein ID:ENSMUSP00000066102
Original member Current member NCBI NM_001369016.1 NP_001355945.1 Accepted alive Link to Nucleotide Sequence:NM_001369016.1Link to Protein Sequence:NP_001355945.1Re-query CCDS DB by Nucleotide ID:NM_001369016Re-query CCDS DB by Protein ID:NP_001355945Link to BLAST:NP_001355945.1
Original member Current member NCBI NM_008135.4 NP_032161.2 Accepted alive Link to Nucleotide Sequence:NM_008135.4Link to Protein Sequence:NP_032161.2Re-query CCDS DB by Nucleotide ID:NM_008135Re-query CCDS DB by Protein ID:NP_032161Link to BLAST:NP_032161.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001355945.1 633 P28571-1 633 100% 0 0
NP_032161.2 633 P28571-1 633 100% 0 0

Chromosomal Locations for CCDS 18538.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 117843106 117843135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117855875 117856031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117856690 117856821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117857203 117857473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117863429 117863561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117863689 117863823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117863913 117864016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117864405 117864642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117864754 117864888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117864998 117865097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117865196 117865296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117867759 117867929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117868048 117868242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1902 nt):
ATGGTAGGAAAAGGTGCCAAAGGGATGTTGAATGGTGCTGTGCCCAGCGAGGCCACCAAGAAGGACCAGA
ACCTCACACGGGGCAACTGGGGCAACCAGATCGAGTTTGTACTGACGAGCGTGGGCTATGCCGTGGGCCT
GGGCAATGTCTGGCGTTTCCCATACCTCTGCTATCGCAACGGGGGAGGAGCCTTCATGTTCCCCTACTTC
ATCATGCTGATCTTCTGCGGGATTCCTCTCTTCTTCATGGAGCTTTCCTTCGGCCAGTTTGCAAGCCAGG
GCTGCCTGGGGGTCTGGCGGATCAGCCCCATGTTCAAAGGCGTGGGCTATGGTATGATGGTGGTGTCCAC
ATACATTGGCATCTACTACAACGTGGTCATCTGCATCGCCTTCTACTACTTCTTCTCGTCCATGACGCAC
GTGCTGCCCTGGGCGTACTGCAACAACCCCTGGAACACACCTGACTGTGCCGGTGTGCTGGACGCTTCCA
ACCTCACCAATGGCTCCCGGCCCGCTGCCCTGTCTGGCAACCTGTCTCACCTGTTCAACTACACCTTGCA
AAGGACCAGCCCCAGCGAGGAGTACTGGAGGCTGTATGTGCTGAAGCTGTCAGACGACATTGGAAACTTT
GGGGAAGTGCGGCTTCCCCTCCTAGGCTGCCTCGGCGTCTCCTGGGTGGTTGTCTTCCTCTGTCTCATCC
GAGGAGTCAAGTCTTCAGGGAAAGTGGTGTACTTCACGGCCACATTCCCCTATGTGGTGCTGACCATTCT
GTTTGTTCGTGGAGTGACCCTGGAAGGAGCCTTCACGGGTATCATGTACTACCTGACCCCACAATGGGAC
AAGATCCTGGAGGCCAAGGTCTGGGGGGATGCAGCCTCTCAGATCTTCTATTCCCTGGGCTGTGCATGGG
GTGGCCTCATCACCATGGCGTCCTACAACAAATTTCACAACAACTGCTACCGGGACAGCGTCATTATCAG
TATCACCAACTGTGCTACCAGCGTCTACGCCGGCTTCGTCATCTTCTCCATCCTGGGCTTCATGGCCAAT
CACCTGGGTGTGGATGTGTCTCGGGTGGCAGACCATGGGCCTGGGCTAGCTTTTGTCGCTTACCCTGAGG
CTCTCACGCTGCTTCCCATCTCTCCACTCTGGTCCTTATTGTTTTTCTTCATGCTCATCTTGCTGGGGCT
GGGTACTCAGTTCTGCCTCCTAGAGACCCTGGTCACTGCCATTGTGGATGAGGTAGGGAATGAGTGGATT
CTGCAGAAGAAGACCTACGTGACCTTGGGCGTCGCTGTGGCTGGCTTCTTGCTGGGCATCCCCCTTACCA
GCCAGGCAGGCATCTACTGGCTGCTGCTGATGGACAACTATGCAGCCAGCTTCTCCTTGGTTGTCATCTC
CTGTATCATGTGTGTATCCATCATGTACATCTATGGGCACCGTAACTACTTCCAGGACATCCAGATGATG
CTAGGATTTCCCCCGCCTCTCTTCTTCCAGATCTGTTGGCGCTTTGTTTCTCCGGCTATCATCTTTTTCA
TTCTCATCTTCACGGTGATCCAGTACCGGCCAATCACCTACAACCACTACCAGTACCCAGGCTGGGCTGT
GGCCATCGGCTTCCTCATGGCTTTGTCGTCTGTCATCTGCATCCCACTGTACGCGCTGTTCCAGCTCTGC
CGCACAGATGGGGACACACTTCTTCAGCGTTTGAAAAATGCCACAAAGCCAAGCAGAGACTGGGGCCCCG
CTCTCCTGGAGCACCGGACTGGGCGCTACGCTCCCACTACAACCCCCTCTCCCGAAGACGGGTTTGAGGT
CCAGCCACTGCACCCGGACAAGGCCCAGATTCCCATCGTGGGCAGTAACGGCTCCAGCCGCTTCCAGGAC
TCCCGGATATGA

Translation (633 aa):
MVGKGAKGMLNGAVPSEATKKDQNLTRGNWGNQIEFVLTSVGYAVGLGNVWRFPYLCYRNGGGAFMFPYF
IMLIFCGIPLFFMELSFGQFASQGCLGVWRISPMFKGVGYGMMVVSTYIGIYYNVVICIAFYYFFSSMTH
VLPWAYCNNPWNTPDCAGVLDASNLTNGSRPAALSGNLSHLFNYTLQRTSPSEEYWRLYVLKLSDDIGNF
GEVRLPLLGCLGVSWVVVFLCLIRGVKSSGKVVYFTATFPYVVLTILFVRGVTLEGAFTGIMYYLTPQWD
KILEAKVWGDAASQIFYSLGCAWGGLITMASYNKFHNNCYRDSVIISITNCATSVYAGFVIFSILGFMAN
HLGVDVSRVADHGPGLAFVAYPEALTLLPISPLWSLLFFFMLILLGLGTQFCLLETLVTAIVDEVGNEWI
LQKKTYVTLGVAVAGFLLGIPLTSQAGIYWLLLMDNYAASFSLVVISCIMCVSIMYIYGHRNYFQDIQMM
LGFPPPLFFQICWRFVSPAIIFFILIFTVIQYRPITYNHYQYPGWAVAIGFLMALSSVICIPLYALFQLC
RTDGDTLLQRLKNATKPSRDWGPALLEHRTGRYAPTTTPSPEDGFEVQPLHPDKAQIPIVGSNGSSRFQD
SRI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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