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Report for CCDS18540.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18540.1 Public Mus musculus 4 Atp6v0b 23 108 98 CCDS HistoryNCBI Gene:114143Re-query CCDS DB by CCDS ID:18540.1Re-query CCDS DB by GeneID:114143See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18540.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036380.13 ENSMUSP00000047682.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036380.13Link to Ensembl Protein Viewer:ENSMUSP00000047682.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000036380Re-query CCDS DB by Protein ID:ENSMUSP00000047682
Original member NCBI NM_033617.3 NP_291095.1 Updated not alive Link to Nucleotide Sequence:NM_033617.3Link to Protein Sequence:NP_291095.1Re-query CCDS DB by Nucleotide ID:NM_033617Re-query CCDS DB by Protein ID:NP_291095
Current member NCBI NM_033617.4 NP_291095.1 Accepted alive Link to Nucleotide Sequence:NM_033617.4Link to Protein Sequence:NP_291095.1Re-query CCDS DB by Nucleotide ID:NM_033617Re-query CCDS DB by Protein ID:NP_291095Link to BLAST:NP_291095.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_291095.1 205 Q91V37 205 100% 0 0

Chromosomal Locations for CCDS 18540.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 117884615 117884641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117885104 117885294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117885629 117885680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117885804 117885873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117886068 117886145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117886276 117886359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117886590 117886638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117887170 117887236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (618 nt):
ATGACGGGGCTGGAGTTGCTCTACCTCGGGATCTTTGTGGCCTTCTGGGCCTGCATGGTCGTTGTGGGAA
TCTGCTACACCATCTTTGACCTGGGCTTTCGCTTTGATGTGGCATGGTTCCTGACGGAAACTTCCCCCTT
CATGTGGTCGAATCTGGGCATTGGCCTAGCAATTTCTCTGTCTGTGGTTGGAGCAGCCTGGGGAATCTAT
ATAACCGGCTCATCCATTATTGGGGGTGGGGTGAAAGCCCCCAGAATCAAAACCAAGAACTTGGTTAGTA
TTATCTTCTGTGAAGCGGTGGCCATCTATGGCATCATCATGGCAATTGTCATCAGCAACATGGCTGAGCC
TTTCAGTGCTACGGAGCCCAAGGCCATTGGCCATCGAAACTACCATGCAGGTTACTCCATGTTTGGGGCT
GGCCTCACAGTCGGTCTGTCCAACCTGTTCTGTGGAGTCTGCGTGGGCATCGTGGGCAGTGGGGCCGCCC
TGGCGGATGCACAGAACCCCAGCCTCTTTGTAAAAATTCTCATCGTGGAGATCTTTGGCAGTGCCATTGG
CCTCTTTGGGGTCATTGTTGCAATCCTTCAGACCTCCAGAGTGAAGATGGGTGACTAG

Translation (205 aa):
MTGLELLYLGIFVAFWACMVVVGICYTIFDLGFRFDVAWFLTETSPFMWSNLGIGLAISLSVVGAAWGIY
ITGSSIIGGGVKAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFSATEPKAIGHRNYHAGYSMFGA
GLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFGSAIGLFGVIVAILQTSRVKMGD


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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