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Report for CCDS18591.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18591.1 Public Mus musculus 4 Ctps1 23 108 98 CCDS HistoryNCBI Gene:51797Re-query CCDS DB by CCDS ID:18591.1Re-query CCDS DB by GeneID:51797See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18591.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030381.7 ENSMUSP00000030381.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030381.7Link to Ensembl Protein Viewer:ENSMUSP00000030381.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000030381Re-query CCDS DB by Protein ID:ENSMUSP00000030381
Original member Current member NCBI NM_001355491.1 NP_001342420.1 Accepted alive Link to Nucleotide Sequence:NM_001355491.1Link to Protein Sequence:NP_001342420.1Re-query CCDS DB by Nucleotide ID:NM_001355491Re-query CCDS DB by Protein ID:NP_001342420Link to BLAST:NP_001342420.1
Original member Current member NCBI NM_016748.2 NP_058028.2 Accepted alive Link to Nucleotide Sequence:NM_016748.2Link to Protein Sequence:NP_058028.2Re-query CCDS DB by Nucleotide ID:NM_016748Re-query CCDS DB by Protein ID:NP_058028Link to BLAST:NP_058028.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342420.1 591 P70698 591 100% 0 0
NP_058028.2 591 P70698 591 100% 0 0

Chromosomal Locations for CCDS 18591.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 120541297 120541381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120541863 120542007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120542531 120542627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120542710 120542765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120543728 120543824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120545018 120545061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120547306 120547368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120548055 120548149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120549464 120549552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120552880 120553012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120553946 120554097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120558279 120558359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120558786 120558869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120561398 120561514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120562778 120562878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120565269 120565439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120567250 120567415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1776 nt):
ATGAAGTACATTCTAGTTACTGGTGGTGTTATATCAGGAATTGGAAAAGGAGTCATCGCCAGCAGTGTGG
GCACAATACTTAAATCATGTGGCTTACATGTAACATCAATTAAGATTGACCCCTATATTAACATTGATGC
AGGAACATTCTCTCCTTATGAACATGGAGAAGTCTTTGTGCTGGATGATGGTGGAGAAGTTGACCTTGAC
TTGGGAAATTATGAGCGATTCCTTGATATCCGTCTCACCAAGGACAATAATCTGACCACAGGGAAGATAT
ACCAGTACGTCATTAACAAGGAGCGCAAAGGGGATTACTTAGGGAAGACTGTCCAGGTTGTCCCTCACAT
CACTGATGCAATCCAAGAGTGGGTGATGAGACAGGCATTAATACCCGTAGACGAAGATGGCTTAGAACCT
CAAGTGTGTGTTATTGAGCTTGGTGGCACAGTGGGAGACATTGAAAGCATGCCCTTCATTGAGGCCTTCC
GCCAGTTCCAGTTCAAGGTCAAGAGGGAAAACTTTTGTAATATCCATGTCAGTCTGGTTCCTCAGCCAAG
TTCAACAGGGGAACAGAAGACAAAACCCACCCAGAACAGTGTTCGGGAACTTAGAGGACTCGGGCTTTCT
CCAGACTTAGTGGTGTGCAGGTGCTCAAATCCTCTTGACACATCTGTGAAAGAGAAAATATCAATGTTTT
GCCATGTGGAACCTGAACAAGTGATCTGTGTTCATGATGTTTCATCCATCTACCGGGTACCCTTGTTGTT
AGAAGAGCAAGGGGTTGTAGACTACTTTCTTCGGAGACTTGACCTTCCTATTGAGAGACAGTCACGAAAG
ATGCTGATGAAATGGAAAGAGATGGCAGACAGGTATGACCGCTTGCTGGAGACCTGCTCGATCGCTCTTG
TGGGCAAATACACCAAATTCTCAGACTCGTACGCCTCTGTCATTAAAGCGCTAGAGCACTCTGCATTGGC
CATTAACCACAAGCTGGAGATCAAGTACATCGATTCCACAGACCTGGAGCCAAGTACCCTGCAGGAAGAG
CCTGTGCGCTACCATGAGGCATGGCAGAAGCTCTGCAGTGCTCATGGAGTGCTGGTTCCAGGAGGATTTG
GTGTTCGGGGAACAGAAGGAAAAATTCAAGCAATTGCTTGGGCTCGGAAACAGAAGAAGCCTTTTTTGGG
TGTGTGCTTAGGAATGCAGCTAGCAGTGGTAGAATTTTCAAGAAATGTGCTGGGATGGCAAGATGCCAAT
TCTACAGAGTTTGACCCCAAGACTAGTCACCCTGTGGTTATAGACATGCCAGAACATAACCCTGGGCAAA
TGGGTGGAACCATGAGGCTGGGCAAGAGGAGAACCCTGTTCCAGACCAAGAACTCAGTCATGAGGAAACT
CTATGGAGACACAGACTACTTGGAAGAAAGGCACCGCCACCGATTTGAGGTGAACCCAGTCCTGAAAAAG
TGCTTGGAAGAGCAAGGCTTGAAGTTCGTTGGCCAAGATGTGGAAGGCGAGAGGATGGAGATCGTGGAGT
TGGAAGATCATCCATTTTTTGTTGGAGTGCAGTATCACCCCGAGTTCCTGTCCAGGCCTATCAAGCCCTC
CCCACCCTACTTTGGCCTCCTCCTGGCCTCTGTGGGGCGGCTCCCACATTACCTTCAGAAAGGTTGCCGG
CTCTCACCCAGGGACACTTACAGTGACAGAAGCGGGAGCAGCTCCCCCGACTCGGAAATCACTGAACTCA
AGTTTCCATCAATAAGTCAGGACTGA

Translation (591 aa):
MKYILVTGGVISGIGKGVIASSVGTILKSCGLHVTSIKIDPYINIDAGTFSPYEHGEVFVLDDGGEVDLD
LGNYERFLDIRLTKDNNLTTGKIYQYVINKERKGDYLGKTVQVVPHITDAIQEWVMRQALIPVDEDGLEP
QVCVIELGGTVGDIESMPFIEAFRQFQFKVKRENFCNIHVSLVPQPSSTGEQKTKPTQNSVRELRGLGLS
PDLVVCRCSNPLDTSVKEKISMFCHVEPEQVICVHDVSSIYRVPLLLEEQGVVDYFLRRLDLPIERQSRK
MLMKWKEMADRYDRLLETCSIALVGKYTKFSDSYASVIKALEHSALAINHKLEIKYIDSTDLEPSTLQEE
PVRYHEAWQKLCSAHGVLVPGGFGVRGTEGKIQAIAWARKQKKPFLGVCLGMQLAVVEFSRNVLGWQDAN
STEFDPKTSHPVVIDMPEHNPGQMGGTMRLGKRRTLFQTKNSVMRKLYGDTDYLEERHRHRFEVNPVLKK
CLEEQGLKFVGQDVEGERMEIVELEDHPFFVGVQYHPEFLSRPIKPSPPYFGLLLASVGRLPHYLQKGCR
LSPRDTYSDRSGSSSPDSEITELKFPSISQD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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